PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G086600.3

Common Name

B456_007G086600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 245aa MW: 26846 Da PI: 6.9876

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G086600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.9e-18	82	136	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k Gorai.007G086600.3 82 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTK 136 788899***********************************************98 PP
2	HD-ZIP_I/II	126.8	9.3e-41	82	171	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l Gorai.007G086600.3 82 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVQELR-AL 171 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	8.7E-15	4	51	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	2.2E-18	57	139	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.59E-19	65	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	78	138	IPR001356	Homeobox domain
SMART	SM00389	3.6E-15	80	142	IPR001356	Homeobox domain
Pfam	PF00046	5.8E-16	82	136	IPR001356	Homeobox domain
CDD	cd00086	9.24E-15	82	139	No hit	No description
PROSITE pattern	PS00027	0	113	136	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.2E-12	138	172	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.6E-25	138	181	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MHADGQLETR SVAGGIDVNQ APALAECEEE DGVSSPNSTV SSIGGKRNER DPVCDETEAE 60 RPSCSRSSDD EDGGGAGDDA SRKKLRLSKE QSLVLEETFK EHSTLNPKQK LALAMQLNLR 120 PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVQELRA LKLSPQLYTH 180 INPPTTLTMC PSCERVAIAS SSSSSLAASS APNSKHQRPV PASSWAALPL PVTHRPFNAP 240 ASRP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	86	SRKKLRL
2	130	138	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489700.1	1e-179	PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1
Swissprot	P46602	2e-96	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A0D2S9L2	1e-179	A0A0D2S9L2_GOSRA; Uncharacterized protein
STRING	Gorai.007G086600.1	1e-178	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	2e-84	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Gorai.007G086600.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]