PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G086000.1 | ||||||||
Common Name | B456_007G086000, LOC105802542 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24918.9 Da PI: 5.7271 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.4e-20 | 104 | 154 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr+++ +g ++AeIrdp++ng +r++lg++ t+e+Aa a+++a+ k++g Gorai.007G086000.1 104 HYKGVRRRP-WGTYAAEIRDPKKNG--ARIWLGTYETPEDAALAYDRAAFKMRG 154 6********.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.248 | 104 | 162 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.20E-31 | 104 | 164 | No hit | No description |
Pfam | PF00847 | 5.2E-14 | 104 | 154 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 104 | 163 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-37 | 104 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 104 | 163 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-12 | 105 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-12 | 144 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MYCEATSDFD LRLLDSIRRH LLEDDDFETQ YPATFSENLA NVQLPITSAQ MGCSKTDAVA 60 INVDQWMTFD QLFDAAEAAA EVSFPSCEMS SKVDTPQTPP KKVHYKGVRR RPWGTYAAEI 120 RDPKKNGARI WLGTYETPED AALAYDRAAF KMRGSKAKLN FPHLIGSDQV QLVRLSNNKR 180 RSPEPCSPSS LSSMSDDGTP KSKRRISELG SDDIHQLMST EF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-31 | 101 | 169 | 2 | 70 | ATERF1 |
3gcc_A | 3e-31 | 101 | 169 | 2 | 70 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN003809 | 0.0 | JN003809.1 Gossypium barbadense ethylene-responsive element-binding protein 6 (EREB6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012489697.1 | 1e-167 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q40479 | 2e-44 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A0D2SGJ9 | 1e-166 | A0A0D2SGJ9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G086000.1 | 1e-166 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-41 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G086000.1 |
Entrez Gene | 105802542 |
Publications ? help Back to Top | |||
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