PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G057100.1
Common NameB456_007G057100, LOC105802247
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 288aa    MW: 31671.8 Da    PI: 9.1747
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G057100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18141195256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tk+q   Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Gorai.007G057100.1 141 RKKLRLTKQQSALLEESFKQHSTLNPNQKQALARQLNLKPRQVEVWFQNRRARTK 195
                         788899***********************************************98 PP
2HD-ZIP_I/II123.97.8e-40141230191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+k+q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +l
  Gorai.007G057100.1 141 RKKLRLTKQQSALLEESFKQHSTLNPNQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTNENRRLQKELQELR-SL 230
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-18125198IPR009057Homeodomain-like
PROSITE profilePS5007117.248137197IPR001356Homeobox domain
SMARTSM003892.7E-15139201IPR001356Homeobox domain
SuperFamilySSF466892.82E-18139205IPR009057Homeodomain-like
PfamPF000464.4E-16141195IPR001356Homeobox domain
CDDcd000864.38E-17141198No hitNo description
PROSITE patternPS000270172195IPR017970Homeobox, conserved site
PfamPF021838.0E-11197231IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.2E-21197241IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGLDDACNTG LVLGLGFSST PETPFKADNQ TPRKSTAKVA PVKSLEPFLT LGLSGDSYGV  60
TVTKKVDVNN KGGGYLHHRH EDSPPTAAAG DLYRPGSPPS AVSSFSSGRV KRERDHSCEE  120
VEVEKNSCRV SDEDEDGVNA RKKLRLTKQQ SALLEESFKQ HSTLNPNQKQ ALARQLNLKP  180
RQVEVWFQNR RARTKLKQTE VDCEFLKRCC ETLTNENRRL QKELQELRSL KTAAQPFCMN  240
MPAATLTMCP SCERIGGVAG DGNSKNPFSM PSKPRFYKPV TNPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189197RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489231.10.0PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466043e-97HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0D2S7K10.0A0A0D2S7K1_GOSRA; Uncharacterized protein
STRINGGorai.007G057100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-98HD-ZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]