PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G056900.1

Common Name

B456_007G056900, LOC105802245

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 189aa MW: 21532.3 Da PI: 8.1151

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G056900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1e-10	79	123	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++ rr+++NRe+ArrsR RK++ +e+L+ v L eN++L ++l Gorai.007G056900.1 79 RKRRRMISNRESARRSRMRKQKHLENLRSQVNRLRLENRELTNQL 123 5789***********************************999665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-11	75	139	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.5E-11	76	124	No hit	No description
PROSITE profile	PS50217	10.783	77	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.35E-11	79	126	No hit	No description
Pfam	PF00170	3.7E-8	79	123	IPR004827	Basic-leucine zipper domain
CDD	cd14702	5.11E-21	80	131	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MLSTVPTVFS SGLMFDNDQY LALESGFTPW DCSELLSISQ TIEPAILGSV SDEPLQGHTN 60 SNSGSDEPNQ PDSSVIDERK RRRMISNRES ARRSRMRKQK HLENLRSQVN RLRLENRELT 120 NQLRLVLCHS HRVATDNDRL QSEHSILRRK LSDIHQILLL KQLQQFSSAW PCNNVVTVMS 180 DQTPPLIT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	82	RKRRR
2	78	99	RKRRRMISNRESARRSRMRKQK
3	91	98	RRSRMRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489229.1	1e-136	PREDICTED: basic leucine zipper 43-like
TrEMBL	A0A0D2P3K0	1e-134	A0A0D2P3K0_GOSRA; Uncharacterized protein
STRING	Gorai.007G056900.1	1e-135	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37730.1	1e-35	basic leucine-zipper 7

Link Out ? help Back to Top
Phytozome	Gorai.007G056900.1
Entrez Gene	105802245

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]