PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G048000.3 | ||||||||
Common Name | B456_007G048000, LOC105802167 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 39485 Da PI: 4.9419 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178 | 2.6e-55 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+e+d+y++ePwdL+++++ e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+ Gorai.007G048000.3 9 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIREIDLYRIEPWDLKERCQIgceEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGR 98 69****************************.9***************964333333566******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle Gorai.007G048000.3 99 DKAVYD-KSKLIGMRKTLVFYKGRAPHGQKSDWIMHEYRLE 138 ******.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-60 | 6 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.243 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-28 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MMESTESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV IREIDLYRIE PWDLKERCQI 60 GCEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKSKLIG MRKTLVFYKG 120 RAPHGQKSDW IMHEYRLESD DHASPQEEGW VVCRAFKKRI TGQTKNMQVW ESSYFYDEAS 180 GMSSVVDPID YISRQNFLPQ NLLCKKEADN YSNFVDHSDD QFVELPQLES PSLPLIKRPS 240 SISEKTKHEE EDDEELNNSK KLTDWRALDK FVASQLSQED RFEGEGVSSF DAINNTNNSN 300 SNNSDMALML LQNSSREEGN KLNEFLNSSS DCDIGICLFA K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-52 | 5 | 159 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root metaxylem pole and in shoot pre-procambium and procambium (PubMed:18445131). Present in root developing xylems (PubMed:16103214). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847220 | 1e-130 | KC847220.1 Gossypium hirsutum NAC domain protein NAC43 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012489102.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Swissprot | Q9SL41 | 1e-157 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A0D2SE78 | 0.0 | A0A0D2SE78_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G048000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-144 | vascular related NAC-domain protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G048000.3 |
Entrez Gene | 105802167 |
Publications ? help Back to Top | |||
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