PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G013300.1
Common NameB456_007G013300, LOC105801810
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 350aa    MW: 37256.3 Da    PI: 5.0438
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G013300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.15.1e-30149207259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ +p+v+++tY+g+H+h+
  Gorai.007G013300.1 149 SDPWAWRKYGQKPIKGSPYPRNYYRCSSSkGCSARKQVERSNLEPNVFIVTYTGDHTHP 207
                         699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-30134209IPR003657WRKY domain
PROSITE profilePS5081132.019143209IPR003657WRKY domain
SuperFamilySSF1182905.49E-26143209IPR003657WRKY domain
SMARTSM007744.0E-36148208IPR003657WRKY domain
PfamPF031061.2E-25150207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAAGDWDLYA VVRSCTSATN TSTSAVSGNY FSNGNNDSWR EDPLACLASL TFEEEDDPLT  60
FPNLKKSGSL QDSYEPLLSD PTTTVISTNH GTDPSSSRSI NGVSSGQYHQ WQQQLIKPLN  120
TQQQLKKPRK RKNQQKRTVC HVTADNLSSD PWAWRKYGQK PIKGSPYPRN YYRCSSSKGC  180
SARKQVERSN LEPNVFIVTY TGDHTHPRPT HRNSLAGSTR NKLSTVQRAA APATASCSTS  240
PTTVSAPGGT AADVNNNAGD NGDDDDESTD NIAPEMSPEA VNDYEDDLLI PDVHVDDDLF  300
KGLEELVGDA GGGSSSSTGS GLGNSSAFGD KFSSWGTGSS ASAAAGGGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-181502101880Disease resistance protein RRS1
5w3x_D5e-181502101880Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131KKPRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697870.0KF669787.1 Gossypium hirsutum WRKY transcription factor 57 (WRKY57) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488563.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A0D2P1570.0A0A0D2P157_GOSRA; Uncharacterized protein
STRINGGorai.007G013300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-52WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]