PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G013200.2
Common NameB456_007G013200, LOC105801809
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 301aa    MW: 32974.1 Da    PI: 9.4528
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G013200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.6e-133983147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  Gorai.007G013200.2 39 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 83
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-163389IPR009057Homeodomain-like
PROSITE profilePS5129414.7463488IPR017930Myb domain
TIGRFAMsTIGR015571.0E-183786IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.4E-63879IPR009057Homeodomain-like
SMARTSM007172.7E-103886IPR001005SANT/Myb domain
PfamPF002491.1E-103983IPR001005SANT/Myb domain
CDDcd001676.65E-84184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MALPGLGPLS TAETAASTVS SSEDPNKKIR KPYTISKSRE SWTEPEHDKF LEALQLFDRD  60
WKKIEAYVGS KTVIQIRSHA QKYFLKVQKS GTSEHLPPPR PKRKAAHPYP QKASKNAVLG  120
QPQVSEPLQS PAALLDTGYV LRSDPSLMLA DPVTRAAASP QTNNAQTISF AQDKKGPGMA  180
NNSCSSTEST RKGTEVGDTT DQGNHGHALR VLPDFAQVYS FIGSVFDPNT KGHMQKLKKM  240
DPIDVETVLL LMRNLSINLT SPDFEDHRRL LSSYEIDTET NNINSGACKA VDNSQSKRIT  300
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.1390.0flower|seedling| flowering
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488559.10.0PREDICTED: protein REVEILLE 6-like isoform X1
SwissprotQ8H0W31e-127RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0D2T6Q60.0A0A0D2T6Q6_GOSRA; Uncharacterized protein
STRINGGorai.007G013200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-111MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]