PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G267900.2
Common NameB456_006G267900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 139aa    MW: 16869 Da    PI: 7.2561
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G267900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.58.3e-17111213128
                 NAM  13 elvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
                         elv+eyL +k+ +++l++ ++  ++e+ +y+++P++L+  ++++ek+wyf++++dk+ ++++ ++   + g W+ +   +e++++kg+++ 
  Gorai.006G267900.2   1 ELVTEYLINKIFHNPLPFWDFseVEEAALYSTHPKSLD--FANGEKKWYFYIHKDKSFSNNTIRKVEDNLGSWSLKWY-EEIHDTKGSKIA 88 
                         8**************777554449999**********8..667899**********99987766667789***97655.899999****** PP

                 NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                           + +vf+++r+   +kt+W m+e +l
  Gorai.006G267900.2  89 FNNHFVFFSKRR---KKTHWKMDELQL 112
                         ********4433...57******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.9861134IPR003441NAC domain
SuperFamilySSF1019411.83E-121127IPR003441NAC domain
PfamPF023651.0E-71111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
ELVTEYLINK IFHNPLPFWD FSEVEEAALY STHPKSLDFA NGEKKWYFYI HKDKSFSNNT  60
IRKVEDNLGS WSLKWYEEIH DTKGSKIAFN NHFVFFSKRR KKTHWKMDEL QLRPEWYKDF  120
NLEEEWALGI LKRGTEYH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103KRRKKTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483320.18e-97PREDICTED: protein FEZ-like isoform X2
TrEMBLA0A0D2S2V93e-96A0A0D2S2V9_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.006G267900.13e-95(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.16e-08NAC family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]