PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G267900.1 | ||||||||
Common Name | B456_006G267900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 140aa MW: 16968.2 Da PI: 7.2561 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 53.4 | 8.4e-17 | 1 | 113 | 13 | 128 |
NAM 13 elvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 elv+eyL +k+ +++l++ ++ ++e+ +y+++P++L ++++ek+wyf++++dk+ ++++ ++ + g W+ + +e++++kg+++ Gorai.006G267900.1 1 ELVTEYLINKIFHNPLPFWDFseVEEAALYSTHPKSLV-DFANGEKKWYFYIHKDKSFSNNTIRKVEDNLGSWSLKWY-EEIHDTKGSKIA 89 8**************777554449999**********6.777899***********99987766667789***97655.899999****** PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 + +vf+++r+ +kt+W m+e +l Gorai.006G267900.1 90 FNNHFVFFSKRR---KKTHWKMDELQL 113 ********4433...57******9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.454 | 1 | 135 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-7 | 1 | 112 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-14 | 1 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
ELVTEYLINK IFHNPLPFWD FSEVEEAALY STHPKSLVDF ANGEKKWYFY IHKDKSFSNN 60 TIRKVEDNLG SWSLKWYEEI HDTKGSKIAF NNHFVFFSKR RKKTHWKMDE LQLRPEWYKD 120 FNLEEEWALG ILKRGTEYH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 104 | KRRKKTH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483318.1 | 1e-97 | PREDICTED: protein FEZ-like isoform X1 | ||||
TrEMBL | A0A0D2T4X8 | 3e-97 | A0A0D2T4X8_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.006G267900.1 | 6e-98 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28670 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 2e-09 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G267900.1 |
Publications ? help Back to Top | |||
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