PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G267800.1 | ||||||||
Common Name | B456_006G267800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 140aa MW: 16746.3 Da PI: 7.5507 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 29.8 | 1.7e-09 | 36 | 81 | 2 | 45 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePw 45 p+GfrF Pt eelv++yL kkv g++l+++++ ++e++ y++ P Gorai.006G267800.1 36 PVGFRFLPTPEELVKQYLIKKVLGNPLPVSDFleVEEAEFYTTPPM 81 79************************99877645888899999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-15 | 33 | 130 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-12 | 36 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MAMVEVEKNY EDVHQNWGHR IPVEEDYCHD WHNQPPVGFR FLPTPEELVK QYLIKKVLGN 60 PLPVSDFLEV EEAEFYTTPP MSCGSWKLRK TREIFDTMGN KIAFKFCFVY YSKLGKTHWR 120 IDEFRLPAEF YKYFKVKVR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483320.1 | 7e-26 | PREDICTED: protein FEZ-like isoform X2 | ||||
TrEMBL | A0A0D2T4W9 | 1e-100 | A0A0D2T4W9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G267800.1 | 1e-101 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM36835 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 1e-08 | NAC domain containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G267800.1 |
Publications ? help Back to Top | |||
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