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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gorai.006G259700.1 | ||||||||
| Common Name | B456_006G259700, LOC105800716 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 673aa MW: 74145.5 Da PI: 6.4247 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91.1 | 9.8e-29 | 214 | 267 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Gorai.006G259700.1 214 KPRVVWSVELHQQFVAAVNQL-GIEKAVPKKILELMNVPGLTRENVASHLQKYRL 267
79*******************.********************************8 PP
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| 2 | Response_reg | 78.2 | 3e-26 | 36 | 144 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89
vl+vdD+p+ +++l+++l+ +y +v+ + +e al +l+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + +
Gorai.006G259700.1 36 VLLVDDDPTCLMILEKMLKACQY-NVTKCNRAETALSMLRENRngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKNVVMKG 124
89*********************.***************99999***********************6654.8****************** PP
HHTTESEEEESS--HHHHHH CS
Response_reg 90 lkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +e+l +
Gorai.006G259700.1 125 VTHGACDYLIKPVRIEALKN 144
****************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 4.0E-179 | 10 | 663 | IPR017053 | Response regulator B-type, plant |
| Gene3D | G3DSA:3.40.50.2300 | 1.3E-42 | 33 | 176 | No hit | No description |
| SuperFamily | SSF52172 | 5.98E-36 | 33 | 157 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 3.9E-30 | 34 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.931 | 35 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 1.5E-23 | 36 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.71E-26 | 37 | 149 | No hit | No description |
| SuperFamily | SSF46689 | 7.53E-20 | 211 | 271 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 10.62 | 211 | 270 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 4.7E-30 | 213 | 272 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.4E-24 | 214 | 267 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.6E-7 | 216 | 266 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010119 | Biological Process | regulation of stomatal movement | ||||
| GO:0010150 | Biological Process | leaf senescence | ||||
| GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 673 aa Download sequence Send to blast |
MNSSSGKSYM STASSSVLWK AGGDVVADQF PAGLRVLLVD DDPTCLMILE KMLKACQYNV 60 TKCNRAETAL SMLRENRNGF DIVISDVHMP DMDGFKLLEH IGLEMDLPVI MMSADDGKNV 120 VMKGVTHGAC DYLIKPVRIE ALKNIWQHVV RKRKNEWKDF EQSGSVEEGD RQPKQSEDAD 180 YSSSANEGNW KSSKRRKDDE DENDERDDTS TLKKPRVVWS VELHQQFVAA VNQLGIEKAV 240 PKKILELMNV PGLTRENVAS HLQKYRLYLR RLSGVSQHPS NLNNSFMNPQ DATFGPLDLQ 300 ALAATGQLPA QSLATLQAAG LGRSTAKSGI PMPLIDQRNI FSFENPKLRF GEAQQQHVNN 360 NKQTNLLHGI PTTMEPKQLA GLHHTAQSMG NMNMPVLSHG SQSSQNNPLL MQMAQPQARG 420 QMLNDSTVGL APRLLSPRGQ SMLSNGMATN VSTRNGVPEN IRAPSYNPVS QTSSMFNFPM 480 NHTSELPGNS FPLVSTPGIS SLAPKVAFQE DVNSEIKGSV GFMPSYDIFN DLNQHKPQNW 540 ELQNVGMMFN SSRPSNSLQG NLDHTQSILV QQGFLSGQNR NSTVISKAMF SAGDSTGHVN 600 AQNSNQHLNS LLDNTVRVKF ERVADAAPAN LYPDHFGQED LMSALLKQQD IIAPAENNDF 660 DFDGYSIDNI PV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-22 | 213 | 273 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00054 | PBM | Transfer from AT4G16110 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012487455.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like isoform X1 | ||||
| Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
| TrEMBL | A0A0D2T4M5 | 0.0 | A0A0D2T4M5_GOSRA; Two-component response regulator | ||||
| STRING | Gorai.006G259700.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2403 | 27 | 73 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Gorai.006G259700.1 |
| Entrez Gene | 105800716 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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