PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G255400.2

Common Name

B456_006G255400, LOC105800672

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 761aa MW: 87724.5 Da PI: 8.6489

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G255400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.5	7.1e-21	46	120	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY YA +vGF++r+ + ++s+r+g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw++++++++HnHel Gorai.006G255400.2 46 DFYGLYAMRVGFKIRTGQLYRSRRDGSVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDSGKWVIDQIQKDHNHEL 120 69************************************876..............589*************************98 PP
2	FAR1	68.7	1.4e-21	200	274	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y++YA++vGF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++kk+++g w+v++l+++HnH+l Gorai.006G255400.2 200 EYYQSYAESVGFRVRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKKKDSGSWMVDRLNKDHNHDL 274 69************************************999..............4899************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-16	46	120	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.2E-17	200	274	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-26	374	467	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.163	654	685	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.9E-5	660	687	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	3.1E-6	661	682	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence Send to blast
MNPMVVNAFP VGIVHVINSG NVESEGDLRM EPSVGLEFNS SDEARDFYGL YAMRVGFKIR 60 TGQLYRSRRD GSVSSRRFVC SKEGFQLNSR TGCPAFIRVQ RRDSGKWVID QIQKDHNHEL 120 GLEGENNSPV LQQKPPVAPK SLVEVLRRPK VKLLGQIENG GSSPSGIINF KRQKRGGDGR 180 QPLPEPYTGL EFNTANEAYE YYQSYAESVG FRVRIGQLFR SKNDGSITSR RFVCSKEGFQ 240 HPSRVGCGAF MRIKKKDSGS WMVDRLNKDH NHDLGEQTVY VNKFSTASKK FIEEETNGMV 300 SMDLGEMNTG KLIKRSRESK IGTDWYPVLL EYFQTRQAED TGFFYSVEVD NGSCRSVFWA 360 DGRSRYSCSQ FGDVVILDTS YRKSNYVVPF ATFVGVNHHK QPVLLGSALI ANESKECFTW 420 LFQTWFKAMS CCRPKSIIAD QDMAIQQAIT EVFPGAHHQF SSWQIRAKER ENLRSMPIEF 480 RYEYEKCIYE SQTTVEFNTT WNSLVNKYNL KGNAWLQQMY DKRESWVPLY LRGKFFAGIP 540 IGETVESFFG TQVNGQTPLR EFIPRYEQGL EQCREDERKE DFNSFNLQSF SQTKEAIEEQ 600 CRRLYTFTIF KIFQDELLQS YSYIGIKTYE EGTICRYLVR RSGHENDKHA VTFSAVNLSV 660 NCSCQMFEFE GVVCRHVLKV FKLLNIRELP SQYILPRWLR NAEYRILCGA ESRVSSQELK 720 AFMIWSLRET ACKYVECGTT SVEKYKLAYE IMREGGKRLY *

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence Send to blast

MNPMVVNAFP VGIVHVINSG NVESEGDLRM EPSVGLEFNS SDEARDFYGL YAMRVGFKIR  60
TGQLYRSRRD GSVSSRRFVC SKEGFQLNSR TGCPAFIRVQ RRDSGKWVID QIQKDHNHEL  120
GLEGENNSPV LQQKPPVAPK SLVEVLRRPK VKLLGQIENG GSSPSGIINF KRQKRGGDGR  180
QPLPEPYTGL EFNTANEAYE YYQSYAESVG FRVRIGQLFR SKNDGSITSR RFVCSKEGFQ  240
HPSRVGCGAF MRIKKKDSGS WMVDRLNKDH NHDLGEQTVY VNKFSTASKK FIEEETNGMV  300
SMDLGEMNTG KLIKRSRESK IGTDWYPVLL EYFQTRQAED TGFFYSVEVD NGSCRSVFWA  360
DGRSRYSCSQ FGDVVILDTS YRKSNYVVPF ATFVGVNHHK QPVLLGSALI ANESKECFTW  420
LFQTWFKAMS CCRPKSIIAD QDMAIQQAIT EVFPGAHHQF SSWQIRAKER ENLRSMPIEF  480
RYEYEKCIYE SQTTVEFNTT WNSLVNKYNL KGNAWLQQMY DKRESWVPLY LRGKFFAGIP  540
IGETVESFFG TQVNGQTPLR EFIPRYEQGL EQCREDERKE DFNSFNLQSF SQTKEAIEEQ  600
CRRLYTFTIF KIFQDELLQS YSYIGIKTYE EGTICRYLVR RSGHENDKHA VTFSAVNLSV  660
NCSCQMFEFE GVVCRHVLKV FKLLNIRELP SQYILPRWLR NAEYRILCGA ESRVSSQELK  720
AFMIWSLRET ACKYVECGTT SVEKYKLAYE IMREGGKRLY *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487384.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A0D2NYI4	0.0	A0A0D2NYI4_GOSRA; Uncharacterized protein
STRING	Gorai.006G255400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Gorai.006G255400.2
Entrez Gene	105800672

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]