PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G255400.1
Common NameB456_006G255400, LOC105800672
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 786aa    MW: 90427.3 Da    PI: 8.3362
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G255400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.47.4e-2171145189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         +fY  YA +vGF++r+ + ++s+r+g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw++++++++HnHel
  Gorai.006G255400.1  71 DFYGLYAMRVGFKIRTGQLYRSRRDGSVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDSGKWVIDQIQKDHNHEL 145
                         69**************************************876..............589***************************98 PP
2FAR168.71.4e-21225299189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         ++Y++YA++vGF+vr+ +  +sk++g+it+r+fvCskeg++++              +r+gC a +++kk+++g w+v++l+++HnH+l
  Gorai.006G255400.1 225 EYYQSYAESVGFRVRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKKKDSGSWMVDRLNKDHNHDL 299
                         69**************************************999..............4899**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1671145IPR004330FAR1 DNA binding domain
PfamPF031012.2E-17225299IPR004330FAR1 DNA binding domain
PfamPF105511.2E-26399492IPR018289MULE transposase domain
PROSITE profilePS5096610.163679710IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-5685712IPR006564Zinc finger, PMZ-type
PfamPF044343.2E-6686707IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MEIDSGSTHF TDFRSSDTNL NGGECMNPMV VNAFPVGIVH VINSGNVESE GDLRMEPSVG  60
LEFNSSDEAR DFYGLYAMRV GFKIRTGQLY RSRRDGSVSS RRFVCSKEGF QLNSRTGCPA  120
FIRVQRRDSG KWVIDQIQKD HNHELGLEGE NNSPVLQQKP PVAPKSLVEV LRRPKVKLLG  180
QIENGGSSPS GIINFKRQKR GGDGRQPLPE PYTGLEFNTA NEAYEYYQSY AESVGFRVRI  240
GQLFRSKNDG SITSRRFVCS KEGFQHPSRV GCGAFMRIKK KDSGSWMVDR LNKDHNHDLG  300
EQTVYVNKFS TASKKFIEEE TNGMVSMDLG EMNTGKLIKR SRESKIGTDW YPVLLEYFQT  360
RQAEDTGFFY SVEVDNGSCR SVFWADGRSR YSCSQFGDVV ILDTSYRKSN YVVPFATFVG  420
VNHHKQPVLL GSALIANESK ECFTWLFQTW FKAMSCCRPK SIIADQDMAI QQAITEVFPG  480
AHHQFSSWQI RAKERENLRS MPIEFRYEYE KCIYESQTTV EFNTTWNSLV NKYNLKGNAW  540
LQQMYDKRES WVPLYLRGKF FAGIPIGETV ESFFGTQVNG QTPLREFIPR YEQGLEQCRE  600
DERKEDFNSF NLQSFSQTKE AIEEQCRRLY TFTIFKIFQD ELLQSYSYIG IKTYEEGTIC  660
RYLVRRSGHE NDKHAVTFSA VNLSVNCSCQ MFEFEGVVCR HVLKVFKLLN IRELPSQYIL  720
PRWLRNAEYR ILCGAESRVS SQELKAFMIW SLRETACKYV ECGTTSVEKY KLAYEIMREG  780
GKRLY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487384.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A0D2NYI40.0A0A0D2NYI4_GOSRA; Uncharacterized protein
STRINGGorai.006G255400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  3. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]