PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G254200.1 | ||||||||
Common Name | B456_006G254200, LOC105800661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 30589.5 Da PI: 9.3233 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.8 | 7.1e-20 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++vk++G g+W+++a+ g++R +k+c++rw +yl Gorai.006G254200.1 21 KGPWTAEEDKLLIEYVKLHGEGRWNSVAKLAGLKRNGKSCRLRWVNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 74 | 118 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Gorai.006G254200.1 74 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 118 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.101 | 16 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.83E-31 | 19 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-17 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-19 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.58E-12 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 18.161 | 73 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 74 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-24 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.81E-10 | 78 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MSWALMARHF GWSIMEESWR KGPWTAEEDK LLIEYVKLHG EGRWNSVAKL AGLKRNGKSC 60 RLRWVNYLRP DLKRGQITPH EESIILELHA RWGNRWSTIA RSLPGRTDNE IKNYWRTHFK 120 KKPDNSIKAK ARILKRQQFQ QQQILQQQQQ QYQQQQNQLD MKRIMSLLDE TEHKVPYVPQ 180 MSRQETMGTT NSYLNHNSTT DQEQGFVYPM IIDGNVSSSD TSNEEFLWDG LWNLDDDFNG 240 NFSAACATSK ASLHNLATPF C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 21 | 122 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012487368.1 | 0.0 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | A0A0D2NYF5 | 0.0 | A0A0D2NYF5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G254200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 1e-90 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G254200.1 |
Entrez Gene | 105800661 |
Publications ? help Back to Top | |||
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