PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G222600.1
Common NameB456_006G222600, LOC105800374
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 316aa    MW: 35162.4 Da    PI: 6.5338
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G222600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19166215356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         ++GVr+++ +g+WvAeIr p++   r+r++lg+f+tae Aa a++ a+  l+ge
  Gorai.006G222600.1 166 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEAAAMAYDTAAYILRGE 215
                         8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-21164224No hitNo description
Gene3DG3DSA:3.30.730.102.2E-31165223IPR001471AP2/ERF domain
PROSITE profilePS5103222.655165222IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-22165223IPR016177DNA-binding domain
SMARTSM003801.9E-35165228IPR001471AP2/ERF domain
PfamPF008472.3E-12166215IPR001471AP2/ERF domain
PRINTSPR003671.3E-10166177IPR001471AP2/ERF domain
PRINTSPR003671.3E-10188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSLEDKFPKM ETFMNKDWPS FSYGMATTGS TFFNNPIIWA SSSSEETPGS NLLKNVPGFI  60
NQDINHGFNP INQAQPSPSM ATTMSQFPDL TSLFGPSKPV IDPINENPPL QTPQQWLRIN  120
QSFTNDQSKG FSDYWLSTTK THPMKYSGRR FQNQHQKGYS SPGKLFRGVR QRHWGKWVAE  180
IRLPRNRTRV WLGTFDTAEA AAMAYDTAAY ILRGEYAQLN FPDLKDQVMA NSLNGNTAAI  240
LEAKLQAISQ GSTVNKKSDL DTTTTMPAEE GVSGLNRNTT KNMEALSSDV DGVQLSRLPS  300
LDMDIIWDAL LVSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20161222163ATERF1
3gcc_A9e-20161222163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147881e-135JX614788.1 Gossypium hirsutum clone NBRI_GE58430 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486920.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A0D2S7Y80.0A0A0D2S7Y8_GOSRA; Uncharacterized protein
STRINGGorai.006G222600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-58ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]