PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G190900.3 | ||||||||
Common Name | B456_006G190900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 464aa MW: 51357.2 Da PI: 7.804 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.4 | 1.2e-31 | 280 | 333 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Gorai.006G190900.3 280 PRMRWTSSLHARFVRAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRT 333 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 277 | 334 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-15 | 277 | 334 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.9E-24 | 280 | 333 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.4E-7 | 281 | 332 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
QTHPPFLPNS FLYAFHHYFI IICNTSHLSQ HVCSFYFFSS YKLFFGDLGQ QQYLETLELG 60 TVMFNKGDLR EQYMNRVPDL SLQISPPNPA PSTACTGNSS FDIWCRKDAL NSLTYGSQAD 120 TQLSLANPAS SASQIDSPSP NYFPTTYDDQ TRHRNLLKCG QNGGQLSNIN HGISLLDVPG 180 PKPTKGIPVY SNTMSLPFLS SDSFVDMDPD KLGFYSSSVA SVLHSADACR RASEAARFNG 240 ISLEKLGPQF HHHYAQHGAA MGSSRFIPKL QSSKRNTRTP RMRWTSSLHA RFVRAVELLG 300 GHERATPKSV LELMDVKDLT LSHVKSHLQM YRTVKSSDKP ASSSEKIRNE GECAEEDCLG 360 VSRNTVSGND KCSEKQGSTS PNLSIQHDYD ENNNSIHLWT NSSRGVGLLS WRNPDECRPQ 420 APSSSQSGKQ FDGSSFSQQI LRVSSVELQN PSLHFSLGKQ TTD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-17 | 281 | 335 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-17 | 281 | 335 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-17 | 281 | 335 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 281 | 335 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 281 | 335 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 281 | 335 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-17 | 281 | 335 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-17 | 281 | 335 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-17 | 281 | 335 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-17 | 281 | 335 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-17 | 281 | 335 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-17 | 281 | 335 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486375.1 | 0.0 | PREDICTED: transcription repressor KAN1-like | ||||
TrEMBL | A0A0D2QD17 | 0.0 | A0A0D2QD17_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.006G190900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 6e-46 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G190900.3 |
Publications ? help Back to Top | |||
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