PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G182800.1

Common Name

B456_006G182800, LOC105799952

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 268aa MW: 30075.7 Da PI: 8.1987

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G182800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	12	66	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rF +av+qLGG+++AtPk il++m+v+gLt++hvkSHLQk+R+ Gorai.006G182800.1 12 KERLRWTQELHDRFEQAVNQLGGPDRATPKGILKAMGVDGLTIYHVKSHLQKFRI 66 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.335	9	69	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-29	11	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-18	11	66	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-25	12	66	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-9	14	64	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-7	98	138	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MRRPSRADGL AKERLRWTQE LHDRFEQAVN QLGGPDRATP KGILKAMGVD GLTIYHVKSH 60 LQKFRILKFV PETNTKGKFE RRNISEILPN FGTTSGAQLN EALQLYMEAQ RKQGDDKLQV 120 RRNLKIKFEA QVRYFERIAG EHRNRVTPTK ATKSLSPISL PSLCEESESN SKDFETDSEA 180 DKNEIESGER IQALKRAGIV EDNSASSSSS SSSSMYAFPL SFSADGYEYD DQNMLLNGGE 240 RLSYTANDIS FPWNIPVCSS PLVPSFM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-22	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-22	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-22	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-22	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527636	1e-108	HQ527636.1 Gossypium herbaceum clone NBRI_B_EYI1BW404IW7BW simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486229.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Swissprot	Q9SJW0	5e-43	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0D2QC55	0.0	A0A0D2QC55_GOSRA; Uncharacterized protein
STRING	Gorai.006G182800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16802	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-45	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G182800.1
Entrez Gene	105799952

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]