PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G172800.2
Common NameB456_006G172800, LOC105799845
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 552aa    MW: 61209.9 Da    PI: 8.2901
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G172800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.6e-1759105148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEde l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Gorai.006G172800.2  59 KGGWTPEEDETLRNAVATFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105
                         688*****************************.************986 PP
2Myb_DNA-binding61.71.5e-19111157148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd+++v++v ++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Gorai.006G172800.2 111 KGPWTQEEDDKIVELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                         79******************************.*************97 PP
3Myb_DNA-binding53.55.5e-17163206146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Gorai.006G172800.2 163 KDAWTLEEELALMNAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.72554105IPR017930Myb domain
SMARTSM007177.4E-1558107IPR001005SANT/Myb domain
PfamPF002498.3E-1659105IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-1560115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2261113IPR009057Homeodomain-like
CDDcd001677.37E-1362105No hitNo description
PROSITE profilePS5129432.538106161IPR017930Myb domain
SuperFamilySSF466894.87E-32108204IPR009057Homeodomain-like
SMARTSM007173.2E-18110159IPR001005SANT/Myb domain
PfamPF002491.2E-18111157IPR001005SANT/Myb domain
CDDcd001671.36E-15113157No hitNo description
Gene3DG3DSA:1.10.10.601.7E-27114160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-23161212IPR009057Homeodomain-like
PROSITE profilePS5129422.308162212IPR017930Myb domain
SMARTSM007175.9E-16162210IPR001005SANT/Myb domain
PfamPF002495.1E-15163206IPR001005SANT/Myb domain
CDDcd001674.90E-12165205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MTELKIEERC LENKQLTTAS SSSVSEGGGS AIVKSPATSS PAPTSPNHRR TTGPIRRAKG  60
GWTPEEDETL RNAVATFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIVELVSKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRI  180
YGNKWAEIAK VLPGRTDNAI KNHWNSSMKK KLDFYLATGK LPPVVKIVLK NEIKDIETPA  240
ATENLLVCSK KESDSTAQTS SGTFDICKPE EDGKDQLESS TPVQDMAATS SIIPSESVET  300
ESAEFKPQSF DANPCSCNSV SMVKFESRRT SSAIVEDKVV ETQLRSDTPT YGPLCYEPPR  360
LQGGTSLDSD NLNKKGMQHE WTITPITSPL SFFTPPCVKG SGFGTQSPES ILRIAAKTFP  420
STPSIFRKRK TSPNKIGKLN EETTKNRVQL SGEQERTENS REQAQFRDGS ACESPAFQGN  480
SSIGPNCTAF NASPPYRLRS KRTAVFKSVE RQLEFAFDKE RHEDSMKSSN LLVNGSSSIE  540
DCLHATKMEV T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-68582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-68582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486072.10.0PREDICTED: myb-related protein B-like
SwissprotQ6R0321e-170MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A0D2QBQ20.0A0A0D2QBQ2_GOSRA; Uncharacterized protein
STRINGGorai.006G172800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-161myb domain protein 3r-5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]