PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G172000.5
Common NameB456_006G172000, LOC105799841
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 436aa    MW: 48541.1 Da    PI: 10.922
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G172000.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66e-08341390147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Gorai.006G172000.5 341 RRPFSVSEVEALVQAVEKLGTGRWRDVKLYAFdnaKHRTYVDLKDKWKTL 390
                         678999************************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.78E-5155226IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.575336395IPR017930Myb domain
SMARTSM007171.1E-7340393IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-10341391IPR009057Homeodomain-like
CDDcd116601.40E-16342392No hitNo description
SuperFamilySSF466893.74E-16342423IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDCKPPHYFC SGSKTSLSKD WTTLGPSRHS DTIETVSRDD NGNYVADQRI KNPSSSRRWR  60
VSPNLNGGAS FRNDGKRRKI FHDGRTSYSR QRSKRISPLK RRDFFNQCPI SGSDRGFQLD  120
DRFNSAADKR GDGNNYCAAI RVASSVTSPH PHPGSRDRNV KLRIKSFKVP ELLVEIPTTA  180
TVGSLKRSVM EAVTTVLGDG LHVGILLQGK KVRDDSKTLL QTGISRDGKH CNLGFMLEPR  240
HAQIKLPRCL GEQGITSHAT SFTLDPRTSS ISLDPPVAGC INGARRDHHL VPSLPNISAS  300
TTPLPNSQSV VSVPAISVEA LAVVPIHHRA GRREFVQRRI RRPFSVSEVE ALVQAVEKLG  360
TGRWRDVKLY AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLAVHAY  420
WSQQQAKQQQ LKPGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-553254281104Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994RQRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486053.10.0PREDICTED: telomere repeat-binding protein 6-like isoform X1
RefseqXP_012486054.10.0PREDICTED: telomere repeat-binding protein 6-like isoform X1
RefseqXP_012486055.10.0PREDICTED: telomere repeat-binding protein 6-like isoform X1
RefseqXP_012486056.10.0PREDICTED: telomere repeat-binding protein 6-like isoform X1
RefseqXP_012486057.10.0PREDICTED: telomere repeat-binding protein 6-like isoform X1
TrEMBLA0A0D2NU290.0A0A0D2NU29_GOSRA; Uncharacterized protein
STRINGGorai.006G172000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.14e-98TRF-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]