PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G158000.1
Common NameB456_006G158000, LOC105799703
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 483aa    MW: 53950.3 Da    PI: 4.7096
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G158000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35511422102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+++++ed +l+ +isw  +g+sfvv+d+ ef+k +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F++gk++
  Gorai.006G158000.1  51 FLSKTFDLVEDTSLDPIISWGPTGQSFVVWDPVEFSKFILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFQRGKRH 132
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+ks
  Gorai.006G158000.1 133 LLKNIQRRKS 142
                         ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.3E-3446140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-5747140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.0E-3748140IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.7E-185174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.6E-3151140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434090114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-18102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MNPDEEKRSP NSLPNLPQTS TFPSSLMELE TFSSGVPQPL EILHGNPVPP FLSKTFDLVE  60
DTSLDPIISW GPTGQSFVVW DPVEFSKFIL PRNFKHNNFS SFVRQLNTYG FRKIDTDKWE  120
FANEAFQRGK RHLLKNIQRR KSPQSQQVGN YFGSSTEAGR SGVEGEIERL RKEKSMLMQE  180
VVELQQEQQG TARHVEVVNQ RLQSAEQRQK QMVSFLAKLF QNPAFLARLR QKKEQGEIGS  240
SRMRRKFVKH QLVELIDSET PAEGQIVKYS KLDWRDIAIS PSAPDIIPTS VEKSPDYLPK  300
GVAEIDLGSE GFPFPVDDEV VVSDELATAH GFLGTPELVG EGTSGMGIQD LKGKNVIGSE  360
QVVNPGYFIS SPEDLVKQKS TPYFSSPISE SVSKQDAWSM DFDATVGMPS SRNELWGNLE  420
TYDIPELGVT GELSDVWDLG FLQAAEDSGA DKWPTEGYPF DNPHTENQGG QSEANRSKKM  480
DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-244814026129Heat shock factor protein 1
5d5v_B5e-244814026129Heat shock factor protein 1
5d5v_D5e-244814026129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226234ARLRQKKEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486200.0KJ748620.1 Gossypium hirsutum HSF17 (HSF17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485841.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A0D2RX260.0A0A0D2RX26_GOSRA; Uncharacterized protein
STRINGGorai.006G158000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109502529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-109heat shock transcription factor A3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]