PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G141000.2
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 484aa    MW: 54310.3 Da    PI: 7.7486
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G141000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.7e-11191226540
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                         k  rr+++NReAAr+sR+RKka++++Le     L++
  Gorai.006G141000.2 191 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 226
                         7789***********************985555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-8184233No hitNo description
SMARTSM003388.8E-7187247IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.266189233IPR004827Basic-leucine zipper domain
CDDcd147087.80E-22191240No hitNo description
PfamPF001703.9E-8191228IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.0E-7191233No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
PfamPF141444.9E-31282356IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MATSRGNYMN HSIQLQHHQQ NNHHQQQQQQ HHQHQIQEHN QPHLNQIPYA MMQSSSSSSI  60
PGNFISSKDS GAYDLGELDQ ALFLYLDGQD TSTVQDQRNN SGMRPPTLNI FPSQPMHVEP  120
PSSTKTNTGL VSPATSGSKR PSESSMELAN ARNDTLSSAP HPPVKAVKSE GNRKGPTSSS  180
EQEGPKTPDP KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIRLTQLEQE LQRARTQGMF  240
FGGGNIIGGD QGLPVGINNI SPDAALFDME YTRWLEEHHR LMCELRAAIQ EHLPENELRI  300
FVDNCLAHLD QVMNLKSMVA KTDVFHLVSG MWKTPAERCF MWMGGFRPSD LIKVILNQIE  360
PLTEQQIMGI CALQQSTQEA EEALTQGLEA LNQSVSDIIT SDSLSCPPNM NNYMGQMAVA  420
INKLSTIEGF VRQADNLRHQ AILRLHQILT IRQAARCLLA IAEYFHRLRA LSSLWLARPR  480
QDQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5833301e-58JX583330.1 Gossypium hirsutum clone NBRI_GE16346 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485614.10.0PREDICTED: transcription factor TGA2 isoform X2
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1U8HTZ20.0A0A1U8HTZ2_GOSHI; transcription factor TGA2-like isoform X2
STRINGGorai.006G141000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-175bZIP family protein