PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G127800.1

Common Name

B456_006G127800, LOC105797929

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 218aa MW: 24256.7 Da PI: 9.5855

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G127800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.9	2.8e-23	16	64	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i k n qvtfskRr+g++KKA+EL++LC++++a+i+fs+ gk++ + Gorai.006G127800.1 16 KKIAKKNNLQVTFSKRRAGLFKKASELCTLCGVDIAIIVFSPAGKVFSF 64 678999****************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.3E-32	8	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.011	8	68	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.29E-34	9	83	No hit	No description
SuperFamily	SSF55455	8.63E-27	9	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-18	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-25	17	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-18	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-18	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MVQKNAIQGR QKITMKKIAK KNNLQVTFSK RRAGLFKKAS ELCTLCGVDI AIIVFSPAGK 60 VFSFGHPNVD SAVHRFLTRN TSSVHYDIVE AHPNANIPEL NAQITNLLEM LEGEKRKGQA 120 LDEVREAGRR QCWWEAPIHE LGLSELQQLR NALEELKRNV GKQANLMQAA VECSNGWPFL 180 KPNGVGISNF GTQGNETNAS SSFTQMHKFG PDLYFDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	2e-15	9	91	1	86	Myocyte-specific enhancer factor 2A
3kov_B	2e-15	9	91	1	86	Myocyte-specific enhancer factor 2A
3kov_I	2e-15	9	91	1	86	Myocyte-specific enhancer factor 2A
3kov_J	2e-15	9	91	1	86	Myocyte-specific enhancer factor 2A
3p57_A	2e-15	9	91	1	86	Myocyte-specific enhancer factor 2A
3p57_B	2e-15	9	91	1	86	Myocyte-specific enhancer factor 2A
3p57_C	2e-15	9	91	1	86	Myocyte-specific enhancer factor 2A
3p57_D	2e-15	9	91	1	86	Myocyte-specific enhancer factor 2A
3p57_I	2e-15	9	91	1	86	Myocyte-specific enhancer factor 2A
3p57_J	2e-15	9	91	1	86	Myocyte-specific enhancer factor 2A
5f28_A	2e-15	9	91	2	87	MEF2C
5f28_B	2e-15	9	91	2	87	MEF2C
5f28_C	2e-15	9	91	2	87	MEF2C
5f28_D	2e-15	9	91	2	87	MEF2C
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269\|PubMed:18713950}.
Uniprot	TISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483252.1	1e-163	PREDICTED: agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	2e-51	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	A0A0D2SWM2	1e-161	A0A0D2SWM2_GOSRA; Uncharacterized protein
STRING	Gorai.006G127800.1	1e-162	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	9e-54	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Gorai.006G127800.1
Entrez Gene	105797929

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]