PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G118900.4
Common NameB456_006G118900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 482aa    MW: 55605.2 Da    PI: 7.0968
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G118900.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.11e-2163156190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY+eYAk++GFs+r+++++ +    +  t+r fvC + g++  ++ +++k +r+r+++r+gC+a l+++k +    ++w+vt ++++HnH
  Gorai.006G118900.4  63 EFYSEYAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLNDSKPQRNRKSSRCGCQAYLRISKVTdlgPAEWRVTGFVNHHNH 153
                         6**************9998877356667999**************9999**********************9977779************* PP

                FAR1  88 ela 90 
                         el 
  Gorai.006G118900.4 154 ELL 156
                         *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-1863156IPR004330FAR1 DNA binding domain
PfamPF105512.1E-21279370IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MMSEDAGRML VMYDDPSDQR SLSLDETSST EESPDETRLS LETTADSVPY IGQRFATHDA  60
AYEFYSEYAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTLN DSKPQRNRKS  120
SRCGCQAYLR ISKVTDLGPA EWRVTGFVNH HNHELLEPNQ VRFLPAYRTI SDADKNRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKSDQEDESI DLLRMCRNNK  240
DKDPNFKFEY TLDSNNRLDN IAWSYASSVQ SYEIYGDAVV FDTTHRLTAF DMPLGIWVGV  300
NNYGMPCFFG CVLLREENSM SFSWALKAFL GFMNGKAPQT ILTDQNMCLK EAIAIEMPST  360
KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVDFFGLHTN  420
RHIANLFALR TLWALPYLRS HFFAGMTTTG HSKAINSFIQ RFLSAQTRLA QFVEQVCSLY  480
L*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485207.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_012485208.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_012485209.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A0D2Q8A90.0A0A0D2Q8A9_GOSRA; Uncharacterized protein
STRINGGorai.006G118900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]