PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G118900.3

Common Name

B456_006G118900, LOC105799289

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 688aa MW: 78761.6 Da PI: 7.4073

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G118900.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.4	1.8e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+eYAk++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a l+++k + ++w+vt ++++HnH Gorai.006G118900.3 63 EFYSEYAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLNDSKPQRNRKSSRCGCQAYLRISKVTdlgPAEWRVTGFVNHHNH 153 6************9998877356667999**********9999******************9977779*********** PP FAR1 88 ela 90 el Gorai.006G118900.3 154 ELL 156 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-18	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-21	279	370	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	564	597	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-7	567	595	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	572	599	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MMSEDAGRML VMYDDPSDQR SLSLDETSST EESPDETRLS LETTADSVPY IGQRFATHDA 60 AYEFYSEYAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTLN DSKPQRNRKS 120 SRCGCQAYLR ISKVTDLGPA EWRVTGFVNH HNHELLEPNQ VRFLPAYRTI SDADKNRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKSDQEDESI DLLRMCRNNK 240 DKDPNFKFEY TLDSNNRLDN IAWSYASSVQ SYEIYGDAVV FDTTHRLTAF DMPLGIWVGV 300 NNYGMPCFFG CVLLREENSM SFSWALKAFL GFMNGKAPQT ILTDQNMCLK EAIAIEMPST 360 KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVDFFGLHTN 420 RHIANLFALR TLWALPYLRS HFFAGMTTTG HSKAINSFIQ RFLSAQTRLA QFVEQVAVAV 480 DFKDQAAEQQ TMQQNLQNIC LKTGAPMESH AASVLTPFAF SKLQEQLVLA AHYASFQMDD 540 ASFQMDDGFL VRHHTKLEGG RKVYWVPREG IISCSCHQFE FSGILCRHAL RVLSTGNCFQ 600 IPDRYLPLRW RRISTSPAKL LQSTSSDHTE RIQLLQSMVS TLVTESAKSK ERLDIATEEV 660 SILLSRIREQ PVASQGARDI SPIHRNL*

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MMSEDAGRML VMYDDPSDQR SLSLDETSST EESPDETRLS LETTADSVPY IGQRFATHDA  60
AYEFYSEYAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTLN DSKPQRNRKS  120
SRCGCQAYLR ISKVTDLGPA EWRVTGFVNH HNHELLEPNQ VRFLPAYRTI SDADKNRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKSDQEDESI DLLRMCRNNK  240
DKDPNFKFEY TLDSNNRLDN IAWSYASSVQ SYEIYGDAVV FDTTHRLTAF DMPLGIWVGV  300
NNYGMPCFFG CVLLREENSM SFSWALKAFL GFMNGKAPQT ILTDQNMCLK EAIAIEMPST  360
KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVDFFGLHTN  420
RHIANLFALR TLWALPYLRS HFFAGMTTTG HSKAINSFIQ RFLSAQTRLA QFVEQVAVAV  480
DFKDQAAEQQ TMQQNLQNIC LKTGAPMESH AASVLTPFAF SKLQEQLVLA AHYASFQMDD  540
ASFQMDDGFL VRHHTKLEGG RKVYWVPREG IISCSCHQFE FSGILCRHAL RVLSTGNCFQ  600
IPDRYLPLRW RRISTSPAKL LQSTSSDHTE RIQLLQSMVS TLVTESAKSK ERLDIATEEV  660
SILLSRIREQ PVASQGARDI SPIHRNL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485207.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_012485208.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_012485209.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0D2NQT8	0.0	A0A0D2NQT8_GOSRA; Uncharacterized protein
STRING	Gorai.006G118900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Gorai.006G118900.3
Entrez Gene	105799289

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]