PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G118900.2 | ||||||||
Common Name | B456_006G118900, LOC105799289 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 688aa MW: 78761.6 Da PI: 7.4073 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.4 | 1.8e-21 | 63 | 156 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+eYAk++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a l+++k + ++w+vt ++++HnH Gorai.006G118900.2 63 EFYSEYAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLNDSKPQRNRKSSRCGCQAYLRISKVTdlgPAEWRVTGFVNHHNH 153 6**************9998877356667999**************9999**********************9977779************* PP FAR1 88 ela 90 el Gorai.006G118900.2 154 ELL 156 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.5E-18 | 63 | 156 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.6E-21 | 279 | 370 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.705 | 564 | 597 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.0E-7 | 567 | 595 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.2E-6 | 572 | 599 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MMSEDAGRML VMYDDPSDQR SLSLDETSST EESPDETRLS LETTADSVPY IGQRFATHDA 60 AYEFYSEYAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTLN DSKPQRNRKS 120 SRCGCQAYLR ISKVTDLGPA EWRVTGFVNH HNHELLEPNQ VRFLPAYRTI SDADKNRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKSDQEDESI DLLRMCRNNK 240 DKDPNFKFEY TLDSNNRLDN IAWSYASSVQ SYEIYGDAVV FDTTHRLTAF DMPLGIWVGV 300 NNYGMPCFFG CVLLREENSM SFSWALKAFL GFMNGKAPQT ILTDQNMCLK EAIAIEMPST 360 KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVDFFGLHTN 420 RHIANLFALR TLWALPYLRS HFFAGMTTTG HSKAINSFIQ RFLSAQTRLA QFVEQVAVAV 480 DFKDQAAEQQ TMQQNLQNIC LKTGAPMESH AASVLTPFAF SKLQEQLVLA AHYASFQMDD 540 ASFQMDDGFL VRHHTKLEGG RKVYWVPREG IISCSCHQFE FSGILCRHAL RVLSTGNCFQ 600 IPDRYLPLRW RRISTSPAKL LQSTSSDHTE RIQLLQSMVS TLVTESAKSK ERLDIATEEV 660 SILLSRIREQ PVASQGARDI SPIHRNL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012485207.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_012485208.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_012485209.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A0D2NQT8 | 0.0 | A0A0D2NQT8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G118900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G118900.2 |
Entrez Gene | 105799289 |
Publications ? help Back to Top | |||
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