PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G111600.1
Common NameB456_006G111600, LOC105799213
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 393aa    MW: 43419 Da    PI: 9.9003
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G111600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.18.2e-13308359556
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                         +r+rr++kNRe+A rsR+RK+a++ eLe +  +L++eN +Lk+ +ee +++ 
  Gorai.006G111600.1 308 RRQRRMIKNRESAARSRARKQAYTVELELELNQLKQENAKLKQLVEENEQKR 359
                         69************************************98884444443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.3E-10304370IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.921306358IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.8E-12307359No hitNo description
CDDcd147076.08E-24308355No hitNo description
SuperFamilySSF579598.13E-10308357No hitNo description
PfamPF001703.4E-10308360IPR004827Basic-leucine zipper domain
PROSITE patternPS000360311326IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MALFESESVA YGGIKAASPS QAPRSPQQQQ QRQELTQDQS VSSLNKQGSI FSLTLDEIQL  60
KSGKAFGSMN MDEFLANLWN VEENQAPPQL DQNEARDDKD KGIGGQPTLA RQGSFSIPTP  120
LCKKTVDEVW FEIQKELPQQ RKANNIADHE PPQRQQTFGE MTLEDFLIKA GVVQEPSSAS  180
SQQRKVASSR PNGTSLEATY GMGHGAGSSQ QKMLTSIQNS SASLDANFGM GHVMGLGFPG  240
HQIVPSNLAA PGNGYAAAYP IFTQSKTMMG ESSNVAENGN GTNCLLEPVV IQNKKRIIDG  300
PPEVVVERRQ RRMIKNRESA ARSRARKQAY TVELELELNQ LKQENAKLKQ LVEENEQKRK  360
QEVLKRKQSK LPAQRKVVDK MRTLRRTVSL GW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485099.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
TrEMBLA0A0D2Q7P00.0A0A0D2Q7P0_GOSRA; Uncharacterized protein
STRINGGorai.006G111600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116522230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44460.11e-60bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]