PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G088000.1
Common NameB456_006G088000, LOC105798979
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 258aa    MW: 28049.2 Da    PI: 9.0875
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G088000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-202676256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  Gorai.006G088000.1 26 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 76
                        69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-142675IPR001471AP2/ERF domain
CDDcd000188.69E-192683No hitNo description
PROSITE profilePS5103223.8942683IPR001471AP2/ERF domain
SMARTSM003808.0E-382689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-322683IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-222684IPR016177DNA-binding domain
PRINTSPR003675.5E-112738IPR001471AP2/ERF domain
PRINTSPR003675.5E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAPREKSTAA VKGNGNGGGG ISKEVHFRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAARAYDAAA REFRGAKAKT NFPLPCENIN NGVNVINCDN HINNNGKINI NINNNQSSNQ  120
SSTVESSSLE PTTIMIDSSP LDLNLGRRSI TGYGSSTVRF PFHQVSPVTG FFHAAGVPTI  180
ASPKVFYFDA FVRSGGMVKG QQYQRMTFDH HDFHTAFNGS VQSDSDSSSV VDLNHDEIKP  240
RPLLNIDLNQ PALPEIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-232684261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484724.10.0PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A0D2SU790.0A0A0D2SU79_GOSRA; Uncharacterized protein
STRINGGorai.006G088000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2501134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-27erf domain protein 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]