PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G079800.1 | ||||||||
Common Name | B456_006G079800, LOC105797889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 157aa MW: 17892.8 Da PI: 8.705 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34 | 6.3e-11 | 24 | 60 | 5 | 41 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k+ +r+++NRe+ArrsR +K++ +e L ++v+ L+ + Gorai.006G079800.1 24 KKRKRMISNRESARRSRMKKQKLLEDLVTEVALLKVQ 60 899*******************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-12 | 20 | 84 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.0E-7 | 22 | 99 | No hit | No description |
PROSITE profile | PS50217 | 9.507 | 22 | 85 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.43E-10 | 24 | 76 | No hit | No description |
Pfam | PF00170 | 1.8E-8 | 24 | 72 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.19E-16 | 25 | 74 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 27 | 42 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MSNVPGMMSS GSEPDAQGVN VDEKKRKRMI SNRESARRSR MKKQKLLEDL VTEVALLKVQ 60 IHKNTNKYEA LMQKIVVLES ENNALKVQQM ELAQYLKNLQ LMQTQMELLE FNLMNQPGRT 120 LCDIIVDINE PPKVQSWQCH GSNQPAIMAS TEMLNY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483227.1 | 1e-112 | PREDICTED: basic leucine zipper 1-like | ||||
TrEMBL | A0A0D2RS20 | 1e-110 | A0A0D2RS20_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G079800.1 | 1e-111 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3036 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49450.1 | 2e-22 | basic leucine-zipper 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G079800.1 |
Entrez Gene | 105797889 |
Publications ? help Back to Top | |||
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