PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G061200.1

Common Name

B456_006G061200, LOC105798678

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 240aa MW: 25550.3 Da PI: 8.6828

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G061200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.1	2.3e-27	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C+++p++ +++q++++ +++k++G++ +++l+ a p++ r+ +++sl+yeA+ r+ dP +G+vg++ +++++ Gorai.006G061200.1 4 SCNGCRVLRKGCTESCTIRPCLqwipnAQSQANATLFLAKFYGRAGLINLIGAGPQNLRPGVFKSLLYEACGRIVDPAHGSVGLMCSGNWH 94 6*******************9996656779******************************************************* PP DUF260 87 leqlkaelallke 99 l++++++++l ++ Gorai.006G061200.1 95 LCEAAVDAVLNGS 107 ***99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.548	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-22	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MRMSCNGCRV LRKGCTESCT IRPCLQWIPN AQSQANATLF LAKFYGRAGL INLIGAGPQN 60 LRPGVFKSLL YEACGRIVDP AHGSVGLMCS GNWHLCEAAV DAVLNGSPIK QVPSELSASK 120 CPQLKSSFDI RHVSKDKKSD DGLRKVKSQG RFKRSASKPK PKLEEVVFEP VSKGGDSWEG 180 ECLSVETVEG SLAKGDELGN GSDLELELTL GLEPRTKKRG NNVKGGGDAT CGGRVEGLC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484293.1	1e-174	PREDICTED: LOB domain-containing protein 40-like isoform X2
Swissprot	Q9CA30	2e-65	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A0D2SSS6	1e-173	A0A0D2SSS6_GOSRA; Uncharacterized protein
STRING	Gorai.006G061200.1	1e-174	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18027	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	1e-67	LOB domain-containing protein 42

Link Out ? help Back to Top
Phytozome	Gorai.006G061200.1
Entrez Gene	105798678

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]