PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G054800.2 | ||||||||
Common Name | B456_006G054800, LOC105798613 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 229aa MW: 25888.2 Da PI: 9.3435 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.5 | 1.1e-19 | 150 | 184 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l Gorai.006G054800.2 150 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 184 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.2E-15 | 144 | 194 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.532 | 144 | 180 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-15 | 146 | 207 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.8E-15 | 148 | 182 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.33E-14 | 149 | 197 | No hit | No description |
Pfam | PF00320 | 3.1E-17 | 150 | 184 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 150 | 175 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEAFDMAACF EDNLLDFASD VGEEDEDKEH NKKSSTSSSS LNPNNSCFSE FAEEELEWLS 60 NKDAFPAVET SFVDVLGTAT KHQSSLTLTN GNVVMYCFGN VKIPVKARSK RLRKCRDLRD 120 HEKNWWVHEN VKTSNATAKG NRWRTMGRKC QHCGAEKTPQ WRAGPLGPKT LCNACGVRYK 180 SGRLVPEYRP ASSPTFSSKL HSNSHRKILE MRRHKQLGFP SMKPMDKR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012484192.1 | 1e-172 | PREDICTED: GATA transcription factor 1-like isoform X1 | ||||
Refseq | XP_012484193.1 | 1e-172 | PREDICTED: GATA transcription factor 1-like isoform X2 | ||||
Refseq | XP_016670344.1 | 1e-172 | PREDICTED: GATA transcription factor 1-like isoform X1 | ||||
Refseq | XP_016670345.1 | 1e-172 | PREDICTED: GATA transcription factor 1-like isoform X2 | ||||
Swissprot | Q8LAU9 | 7e-45 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A2P5SBW5 | 1e-171 | A0A2P5SBW5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G054800.1 | 1e-171 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 4e-47 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G054800.2 |
Entrez Gene | 105798613 |
Publications ? help Back to Top | |||
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