PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G054500.1

Common Name

B456_006G054500, LOC105797851

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 163aa MW: 18556.8 Da PI: 9.4604

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G054500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41	4.2e-13	80	134	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+++NR +ArrsR RK+ +e+L+++vk+L+ +N++L ++l++l+++ l Gorai.006G054500.1 80 RKLRRMISNRASARRSRMRKRNHLENLTNEVKQLQIQNQELNNRLKSLSDLNHCL 134 6789********************************************9987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.6E-13	71	135	No hit	No description
SMART	SM00338	7.3E-12	76	140	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.024	78	129	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.05E-12	80	134	No hit	No description
Pfam	PF00170	1.1E-11	80	135	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	83	98	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MFSTVSATFS PDSMLDNDPI PDIETNIMKW DWSELFSPSQ STGSARSSGT GSDEAKQSLT 60 GGSTSSLKDP NQRVPTIDER KLRRMISNRA SARRSRMRKR NHLENLTNEV KQLQIQNQEL 120 NNRLKSLSDL NHCLRIDNNR VRFECSILQQ EVLDMRQLLV FT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483207.1	1e-116	PREDICTED: light-inducible protein CPRF2-like
Refseq	XP_016673345.1	1e-116	PREDICTED: bZIP transcription factor 53-like
TrEMBL	A0A0D2RXJ5	1e-114	A0A0D2RXJ5_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8I538	1e-114	A0A1U8I538_GOSHI; bZIP transcription factor 53-like
TrEMBL	A0A2P5SBU0	1e-114	A0A2P5SBU0_GOSBA; Uncharacterized protein
STRING	Gorai.006G054500.1	1e-115	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22417	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	2e-14	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	Gorai.006G054500.1
Entrez Gene	105797851

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]