PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G045100.3
Common NameB456_006G045100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 145aa    MW: 16769.3 Da    PI: 10.06
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G045100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.9e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +rienk+nrqvtfskRrng+lKK +ELSvLCdaeva+iifss+gkl e++s
  Gorai.006G045100.3  9 ERIENKINRQVTFSKRRNGLLKKSYELSVLCDAEVALIIFSSRGKLSEFAS 59
                        69***********************************************86 PP
2K-box67.64.3e-23831411169
               K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                           ++++l+qe+ +Lk+++e+Lqr+qRhllGe+LesL++keL ++e+qL+++l++ R+kK
  Gorai.006G045100.3  83 LDETQTLYQEVLRLKAKYESLQRSQRHLLGEELESLTVKELYKIEKQLDRALSQARQKK 141
                         5689******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.006161IPR002100Transcription factor, MADS-box
CDDcd002653.71E-37277No hitNo description
SuperFamilySSF554552.49E-30291IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-1785141IPR002487Transcription factor, K-box
PROSITE profilePS5129711.43386144IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MGRGKVVLER IENKINRQVT FSKRRNGLLK KSYELSVLCD AEVALIIFSS RGKLSEFASN  60
ISVPTTLEKY WQHRYSSPVD IPLDETQTLY QEVLRLKAKY ESLQRSQRHL LGEELESLTV  120
KELYKIEKQL DRALSQARQK KVVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-20178175MEF2 CHIMERA
6byy_B2e-20178175MEF2 CHIMERA
6byy_C2e-20178175MEF2 CHIMERA
6byy_D2e-20178175MEF2 CHIMERA
6bz1_A2e-20178175MEF2 CHIMERA
6bz1_B2e-20178175MEF2 CHIMERA
6bz1_C2e-20178175MEF2 CHIMERA
6bz1_D2e-20178175MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5879951e-62JX587995.1 Gossypium hirsutum clone NBRI_GE22289 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484024.13e-97PREDICTED: MADS-box transcription factor 6-like isoform X1
SwissprotQ8LLR13e-59MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A0D2SS442e-99A0A0D2SS44_GOSRA; Uncharacterized protein
STRINGGorai.006G045100.11e-96(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.14e-54AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]