PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G008200.1
Common NameB456_006G008200, LOC105797803
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 302aa    MW: 34097.3 Da    PI: 8.1127
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G008200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33169226259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCt ++C vkk+vers +dp+vv++tYeg+Hnh+
  Gorai.006G008200.1 169 EDGYRWRKYGQKAVKNSPYPRSYYRCTAQKCGVKKRVERSFQDPSVVITTYEGRHNHQ 226
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.7E-35153228IPR003657WRKY domain
SuperFamilySSF1182901.7E-29161228IPR003657WRKY domain
PROSITE profilePS5081132.466163228IPR003657WRKY domain
SMARTSM007741.2E-38168227IPR003657WRKY domain
PfamPF031064.0E-26169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSSSNEKNDP LYNYDPFQGF NSSTFPFFDY NNLLVYSQAA PTPPFQGLDS SYMNFTDCLH  60
DQNSFSRPFF DLSGSSSDVV GPVHDNISNS KQTVDDSVRI NIDNTENPST PNSSVSSPSN  120
GGTAVEDSSK TNKGSEHEKS KKVNKPKKER QQREPRFAFL TKTEIDVLED GYRWRKYGQK  180
AVKNSPYPRS YYRCTAQKCG VKKRVERSFQ DPSVVITTYE GRHNHQIPIS LRGNNITSSA  240
GFPHEFLAHY FFPSTSNHQE ENSIQHQSVA LHQHQQQQQL QVSDYGLLHN LVSPSTRKQA  300
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-301612281077Probable WRKY transcription factor 4
2lex_A2e-301612281077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311040.0KF031104.1 Gossypium hirsutum WRKY transcription factor 73 (WRKY73) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483174.10.0PREDICTED: probable WRKY transcription factor 28
SwissprotQ8VWJ28e-53WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A0D2NJW30.0A0A0D2NJW3_GOSRA; Uncharacterized protein
STRINGGorai.006G008200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2457434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.15e-50WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  5. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]