PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G245700.1
Common NameB456_005G245700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 203aa    MW: 22592.4 Da    PI: 6.5091
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G245700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.23.5e-1362119562
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                         ++ +r+++NRe+ArrsR RK++ ++ L   v +L++eN++   +++  ++ + ++++e
  Gorai.005G245700.1  62 RKRKRMISNRESARRSRMRKQKHLDDLMAQVSQLQNENHQILTTVSITTQRYLNVEAE 119
                         5789***********************************9998888777777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-1858122IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.9E-1160106No hitNo description
PROSITE profilePS5021710.47360123IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.5E-1362114No hitNo description
PfamPF001704.9E-1162106IPR004827Basic-leucine zipper domain
CDDcd147024.18E-2263113No hitNo description
PROSITE patternPS0003606580IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSPILSEIFF SGFMINSTFI RRTQLVQSFS VVFLYCGTSS GSSTMVTNSG SDEDLQALMN  60
ERKRKRMISN RESARRSRMR KQKHLDDLMA QVSQLQNENH QILTTVSITT QRYLNVEAEN  120
SVLRAQANEL SHRLQSLNDI IDSLNGCNNN IGGADGGGDC GGFNVATIGF NEMVDHSFIN  180
PFNLAYLNQP IMASADNNMF QY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16182RKRKRMISNRESARRSRMRKQK
27481RRSRMRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480362.11e-120PREDICTED: ocs element-binding factor 1-like
SwissprotC0Z2L54e-47BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0D2NI131e-147A0A0D2NI13_GOSRA; Uncharacterized protein
STRINGGorai.005G245700.11e-148(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-46basic leucine-zipper 44
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]