PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G234900.1

Common Name

B456_005G234900, LOC105795218

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 237aa MW: 26228.1 Da PI: 7.1683

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G234900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.5	3.5e-19	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEde l ++v+++G+++W++I+r ++ gR++k+c++rw + Gorai.005G234900.1 9 KGPWGPEEDESLRKLVQLHGPRNWSLISRSIP-GRSGKSCRLRWCNQ 54 79****************************.*********985 PP
2	Myb_DNA-binding	60.3	4.2e-19	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde++++a++++G++ W+tIar ++ gRt++ +k++w++ Gorai.005G234900.1 63 PFTAEEDEIIIKAHAKFGNK-WATIARLLN-GRTDNAVKNHWNST 105 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.068	4	59	IPR017930	Myb domain
SuperFamily	SSF46689	1.8E-31	6	102	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-15	8	57	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-18	9	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-25	10	62	IPR009057	Homeodomain-like
CDD	cd00167	2.98E-14	11	53	No hit	No description
PROSITE profile	PS51294	21.935	60	110	IPR017930	Myb domain
SMART	SM00717	2.3E-16	60	108	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-16	63	105	IPR001005	SANT/Myb domain
CDD	cd00167	7.73E-13	63	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-23	63	109	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDQDIDRVKG PWGPEEDESL RKLVQLHGPR NWSLISRSIP GRSGKSCRLR WCNQLSPEVA 60 HRPFTAEEDE IIIKAHAKFG NKWATIARLL NGRTDNAVKN HWNSTLKRRR SAEDGDSVQE 120 SERRSSKFPR SGSISNPGSP TGSDVSDLGL SVAESTPHSR VSTALTLGRS WSDELVELNN 180 DNSCTDKESG SVAEKHDNGT KTASLGTELL AAMQEMIRKE VRDCMAEFGF HNQCWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-39	8	109	3	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	8e-39	8	109	57	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	8e-39	8	109	57	158	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-39	8	109	3	104	C-Myb DNA-Binding Domain
1msf_C	2e-39	8	109	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480196.1	1e-174	PREDICTED: transcription factor MYB44-like
Swissprot	O23160	9e-73	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A0D2PYB5	1e-173	A0A0D2PYB5_GOSRA; Uncharacterized protein
STRING	Gorai.005G234900.1	1e-174	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM677	28	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	4e-75	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Gorai.005G234900.1
Entrez Gene	105795218

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]