PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.005G226000.6 | ||||||||
Common Name | B456_005G226000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 223aa MW: 24460 Da PI: 9.346 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.2 | 6.4e-15 | 184 | 218 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C++Cg + Tp +Rrgp g++tLCnaCGl+++ k Gorai.005G226000.6 184 CQHCGINEklTPAMRRGPAGPRTLCNACGLMWANK 218 ********************************875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.5E-6 | 50 | 85 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.258 | 50 | 85 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.9E-9 | 54 | 84 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.0E-15 | 118 | 160 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.818 | 118 | 160 | IPR010402 | CCT domain |
SMART | SM00401 | 1.1E-4 | 178 | 222 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-9 | 179 | 217 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-12 | 182 | 218 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.05E-11 | 183 | 218 | No hit | No description |
Pfam | PF00320 | 1.6E-12 | 184 | 218 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 184 | 211 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MVDGVAMDTV NQRGLLGRPY GYLHDDGGFE RKDIKGAHKA VMNGVMSSVQ PTRTSELTIA 60 FEGEVYVFPA VTSEKVQAVL LLLGGCDTSI NVPSSEFLLQ EKVKVVGDSS RGSKISRRIA 120 SLVRFREKRK ERCFEKKIRY TCRKEVAQRM HRKNGQFASV KDSNSGEGSC DQSDDTPDSV 180 LRSCQHCGIN EKLTPAMRRG PAGPRTLCNA CGLMWANKVG VE* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017633519.1 | 1e-162 | PREDICTED: GATA transcription factor 19-like isoform X1 | ||||
Swissprot | B8AR30 | 5e-55 | GAT19_ORYSI; GATA transcription factor 19 | ||||
TrEMBL | A0A0D2SLW6 | 1e-164 | A0A0D2SLW6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G226000.1 | 1e-161 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.1 | 6e-45 | ZIM-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.005G226000.6 |
Publications ? help Back to Top | |||
---|---|---|---|
|