PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G226000.4 | ||||||||
Common Name | B456_005G226000, LOC105795122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 346aa MW: 38235.6 Da PI: 5.1899 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.3 | 2.9e-15 | 181 | 217 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg + Tp +Rrgp g++tLCnaCGl+++ kg+ Gorai.005G226000.4 181 CQHCGINEklTPAMRRGPAGPRTLCNACGLMWANKGT 217 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.5E-6 | 50 | 85 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.258 | 50 | 85 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.4E-9 | 54 | 84 | IPR010399 | Tify domain |
Pfam | PF06203 | 5.8E-15 | 118 | 160 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.818 | 118 | 160 | IPR010402 | CCT domain |
SMART | SM00401 | 3.3E-9 | 175 | 228 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.19E-11 | 177 | 229 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 180 | 221 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.25E-14 | 180 | 227 | No hit | No description |
Pfam | PF00320 | 6.3E-13 | 181 | 217 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 181 | 208 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MVDGVAMDTV NQRGLLGRPY GYLHDDGGFE RKDIKGAHKA VMNGVMSSVQ PTRTSELTIA 60 FEGEVYVFPA VTSEKVQAVL LLLGGCDTSI NVPSSEFLLQ EKVKVVGDSS RGSKISRRIA 120 SLVRFREKRK ERCFEKKIRY TCRKEVAQRM HRKNGQFASV KDSNSGEGSC DQSDDTPDSV 180 CQHCGINEKL TPAMRRGPAG PRTLCNACGL MWANKGTLRD LRKGGRSTHF DSKELETPTD 240 IKPSTLEPEN SFANNDEQGS PQEKKPVPMD SENHLITSNE QEFAQNSHPF LIHVENSSVN 300 LDNEDIQETL EELADASGSD FEIPSHFDEQ VDIDDSNIVT LWPGT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480064.1 | 0.0 | PREDICTED: GATA transcription factor 28-like isoform X2 | ||||
TrEMBL | A0A0D2PXW0 | 0.0 | A0A0D2PXW0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G226000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 1e-50 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G226000.4 |
Entrez Gene | 105795122 |
Publications ? help Back to Top | |||
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