PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G226000.3
Common NameB456_005G226000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 347aa    MW: 38364.8 Da    PI: 5.1899
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G226000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.32.9e-15182218135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg  +  Tp +Rrgp g++tLCnaCGl+++ kg+
  Gorai.005G226000.3 182 CQHCGINEklTPAMRRGPAGPRTLCNACGLMWANKGT 218
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.5E-65085IPR010399Tify domain
PROSITE profilePS5132012.2585085IPR010399Tify domain
PfamPF062003.4E-95484IPR010399Tify domain
PROSITE profilePS5101712.818116158IPR010402CCT domain
PfamPF062035.9E-15116158IPR010402CCT domain
SMARTSM004014.1E-9176229IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-14180222IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.61E-11180230No hitNo description
CDDcd002021.47E-14181228No hitNo description
PfamPF003206.4E-13182218IPR000679Zinc finger, GATA-type
PROSITE patternPS003440182209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVDGVAMDTV NQRGLLGRPY GYLHDDGGFE RKDIKGAHKA VMNGVMSSVQ PTRTSELTIA  60
FEGEVYVFPA VTSEKVQAVL LLLGGCDTSI NVPSSEFLLQ EKVVGDSSRG SKISRRIASL  120
VRFREKRKER CFEKKIRYTC RKEVAQRMHR KNGQFASVKD SNSGEGSCDQ SDDTPDSVLR  180
SCQHCGINEK LTPAMRRGPA GPRTLCNACG LMWANKGTLR DLRKGGRSTH FDSKELETPT  240
DIKPSTLEPE NSFANNDEQG SPQEKKPVPM DSENHLITSN EQEFAQNSHP FLIHVENSSV  300
NLDNEDIQET LEELADASGS DFEIPSHFDE QVDIDDSNIV TLWPGT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480063.10.0PREDICTED: GATA transcription factor 28-like isoform X1
TrEMBLA0A0D2NH430.0A0A0D2NH43_GOSRA; Uncharacterized protein
STRINGGorai.005G226000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.12e-47ZIM-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]