PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G226000.2
Common NameB456_005G226000, LOC105795122
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 349aa    MW: 38592.1 Da    PI: 5.3227
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G226000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.32.9e-15184220135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg  +  Tp +Rrgp g++tLCnaCGl+++ kg+
  Gorai.005G226000.2 184 CQHCGINEklTPAMRRGPAGPRTLCNACGLMWANKGT 220
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.5E-65085IPR010399Tify domain
PROSITE profilePS5132012.2585085IPR010399Tify domain
PfamPF062003.5E-95484IPR010399Tify domain
PfamPF062035.9E-15118160IPR010402CCT domain
PROSITE profilePS5101712.818118160IPR010402CCT domain
SMARTSM004014.1E-9178231IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.66E-11182232No hitNo description
Gene3DG3DSA:3.30.50.102.8E-14182224IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.49E-14183230No hitNo description
PfamPF003206.4E-13184220IPR000679Zinc finger, GATA-type
PROSITE patternPS003440184211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVDGVAMDTV NQRGLLGRPY GYLHDDGGFE RKDIKGAHKA VMNGVMSSVQ PTRTSELTIA  60
FEGEVYVFPA VTSEKVQAVL LLLGGCDTSI NVPSSEFLLQ EKVKVVGDSS RGSKISRRIA  120
SLVRFREKRK ERCFEKKIRY TCRKEVAQRM HRKNGQFASV KDSNSGEGSC DQSDDTPDSV  180
LRSCQHCGIN EKLTPAMRRG PAGPRTLCNA CGLMWANKGT LRDLRKGGRS THFDSKELET  240
PTDIKPSTLE PENSFANNDE QGSPQEKKPV PMDSENHLIT SNEQEFAQNS HPFLIHVENS  300
SVNLDNEDIQ ETLEELADAS GSDFEIPSHF DEQVDIDDSN IVTLWPGT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480063.10.0PREDICTED: GATA transcription factor 28-like isoform X1
TrEMBLA0A0D2RJY10.0A0A0D2RJY1_GOSRA; Uncharacterized protein
STRINGGorai.005G226000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.17e-49ZIM-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]