PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.005G226000.1 | ||||||||
Common Name | B456_005G226000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 391aa MW: 43485.8 Da PI: 5.784 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47 | 3.4e-15 | 184 | 220 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg + Tp +Rrgp g++tLCnaCGl+++ kg+ Gorai.005G226000.1 184 CQHCGINEklTPAMRRGPAGPRTLCNACGLMWANKGT 220 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.5E-6 | 50 | 85 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.258 | 50 | 85 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.0E-9 | 54 | 84 | IPR010399 | Tify domain |
Pfam | PF06203 | 6.9E-15 | 118 | 160 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.818 | 118 | 160 | IPR010402 | CCT domain |
SMART | SM00401 | 4.1E-9 | 178 | 231 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.32E-11 | 182 | 232 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.3E-14 | 182 | 224 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.07E-14 | 183 | 230 | No hit | No description |
Pfam | PF00320 | 7.5E-13 | 184 | 220 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 184 | 211 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 391 aa Download sequence Send to blast |
MVDGVAMDTV NQRGLLGRPY GYLHDDGGFE RKDIKGAHKA VMNGVMSSVQ PTRTSELTIA 60 FEGEVYVFPA VTSEKVQAVL LLLGGCDTSI NVPSSEFLLQ EKVKVVGDSS RGSKISRRIA 120 SLVRFREKRK ERCFEKKIRY TCRKEVAQRM HRKNGQFASV KDSNSGEGSC DQSDDTPDSV 180 LRSCQHCGIN EKLTPAMRRG PAGPRTLCNA CGLMWANKGT LRDLRKGGRS THFDSKELET 240 PTDIKPSTLE PENSFANNDE QGSPQEKKPV PMDSENHLIT SNEQILVGHY ISNLRYRVAR 300 DCIFAHYQVA NDPILLIHQI LSTDMQEFAQ NSHPFLIHVE NSSVNLDNED IQETLEELAD 360 ASGSDFEIPS HFDEQVDIDD SNIVTLWPGT * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016691713.1 | 0.0 | PREDICTED: GATA transcription factor 19-like isoform X1 | ||||
TrEMBL | A0A0D2RJY5 | 0.0 | A0A0D2RJY5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G226000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12294 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.1 | 2e-48 | ZIM-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.005G226000.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|