PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G189800.2
Common NameB456_005G189800, LOC105794737
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 249aa    MW: 28343.4 Da    PI: 4.6265
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G189800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-182376457
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        ++++t++q+e Le+ Fe ++++  +++ +LAk+lgL+ rqV +WFqNrRa+ k+
  Gorai.005G189800.2 23 KRRLTATQVEFLERSFEVENKLESDRKLRLAKELGLQPRQVAIWFQNRRARSKN 76
                        5689***********************************************995 PP
2HD-ZIP_I/II121.15.6e-3922111291
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         kkrrl++ qv++LE+sFe e+kLe++rK +la+eLglqprqva+WFqnrRAR k+kqlEkdy++L++++d+lk++ ++L ke+++L++++
  Gorai.005G189800.2  22 KKRRLTATQVEFLERSFEVENKLESDRKLRLAKELGLQPRQVAIWFQNRRARSKNKQLEKDYDSLRATFDKLKADFDNLLKEKDDLKNQV 111
                         9**************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-181479IPR009057Homeodomain-like
PROSITE profilePS5007116.8761777IPR001356Homeobox domain
SMARTSM003893.0E-172081IPR001356Homeobox domain
PfamPF000461.7E-152275IPR001356Homeobox domain
CDDcd000863.03E-172278No hitNo description
Gene3DG3DSA:1.10.10.601.0E-182484IPR009057Homeodomain-like
PRINTSPR000311.2E-54857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000311.2E-55773IPR000047Helix-turn-helix motif
PfamPF021831.4E-1577118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEYEYVNGGD DLDGSCQPAG VKKRRLTATQ VEFLERSFEV ENKLESDRKL RLAKELGLQP  60
RQVAIWFQNR RARSKNKQLE KDYDSLRATF DKLKADFDNL LKEKDDLKNQ VLALKEKLLI  120
KEKGMENLGS FEAIHSSNDE PQKPNPDASH VPLLACKQEE ACSAKSDVFD SDSPHYTDGH  180
GYHSSFIEPT DSSNVFEPDQ SDEEDDLSKS LLHPPLFFPK FDCYYDAPAT SCNFSLPVED  240
QSFWSSLY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16977RRARSKNKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479493.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
RefseqXP_012479494.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBLA0A0D2PVE00.0A0A0D2PVE0_GOSRA; Uncharacterized protein
TrEMBLA0A0D2SJP80.0A0A0D2SJP8_GOSRA; Uncharacterized protein
STRINGGorai.005G189800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-38homeobox 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]