PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G158200.4

Common Name

B456_005G158200, LOC105794382

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 589aa MW: 63495.6 Da PI: 9.1427

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G158200.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Gorai.005G158200.4 72 FICEVCNKGFQREQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	13.1	0.00028	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Gorai.005G158200.4 148 WKCEKCSKRYAVQSDWKAHSKTC 170 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.6E-6	71	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.27E-7	71	94	No hit	No description
SMART	SM00355	0.0052	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	72	94	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.9E-5	72	94	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	113	143	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.1E-5	136	169	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.27E-7	143	168	No hit	No description
SMART	SM00355	130	148	168	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MAAASSSTPF FGTREENQNQ MMQVQSSTAT PTSSTAPTTA PQKRKRNHPG TSYPDAEVIA 60 LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL RQKTTKEVKR KVYLCPEPTC 120 VHHDPSKALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG 180 TLFSRRDSFI THRAFCDALA QESARHPTNL STMGSHHLFG GNHHMSLGLS HVGSQIPPLQ 240 DQNQVQPSRN LLRLGSTSGA VKFDHLISPS NPSSLQNMPS SMFFMAEAAN QGFHQDHQSH 300 HGHGLYPNKP LHGLMQLPDL QGSTNNSPTS SNFFNLGFFS NTSATSSIST SEIGGGQGPA 360 LFPSNMGDQV GSGMSSLYTT SMQHENISPH MSATALLQKA AQIGSTTSNN TTSTLLRGLG 420 SSLSGGTKSD RPVFSPNFGS NFEGGNGSET LRSHMEDDSN LQGLMNSLAA NGNSSIFDGG 480 PSHGQDNNFG GFNGSGLTLE PQSSNANFCN VNEAKLHQNL AAGIGGTDKL TLDFLGVGGM 540 VGNISGGFSQ REQHGINISS LEPDMKSSVQ PNTEHFGHAK LVKAPRQA*

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MAAASSSTPF FGTREENQNQ MMQVQSSTAT PTSSTAPTTA PQKRKRNHPG TSYPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL RQKTTKEVKR KVYLCPEPTC  120
VHHDPSKALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESARHPTNL STMGSHHLFG GNHHMSLGLS HVGSQIPPLQ  240
DQNQVQPSRN LLRLGSTSGA VKFDHLISPS NPSSLQNMPS SMFFMAEAAN QGFHQDHQSH  300
HGHGLYPNKP LHGLMQLPDL QGSTNNSPTS SNFFNLGFFS NTSATSSIST SEIGGGQGPA  360
LFPSNMGDQV GSGMSSLYTT SMQHENISPH MSATALLQKA AQIGSTTSNN TTSTLLRGLG  420
SSLSGGTKSD RPVFSPNFGS NFEGGNGSET LRSHMEDDSN LQGLMNSLAA NGNSSIFDGG  480
PSHGQDNNFG GFNGSGLTLE PQSSNANFCN VNEAKLHQNL AAGIGGTDKL TLDFLGVGGM  540
VGNISGGFSQ REQHGINISS LEPDMKSSVQ PNTEHFGHAK LVKAPRQA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	144	205	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-34	144	205	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2370	9e-38	flower\|seedling\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48819943	9e-38

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208494	1e-122	AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478991.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X2
TrEMBL	A0A0D2PTS5	0.0	A0A0D2PTS5_GOSRA; Uncharacterized protein
STRING	Gorai.005G158200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-119	indeterminate(ID)-domain 5

Link Out ? help Back to Top
Phytozome	Gorai.005G158200.4
Entrez Gene	105794382

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]