PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G144500.1

Common Name

B456_005G144500, LOC105794228

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 300aa MW: 32505.8 Da PI: 6.7898

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G144500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.6	5.2e-33	168	225	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+ Gorai.005G144500.1 168 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 225 8******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-33	152	226	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-28	159	225	IPR003657	WRKY domain
PROSITE profile	PS50811	29.39	162	227	IPR003657	WRKY domain
SMART	SM00774	2.8E-38	167	226	IPR003657	WRKY domain
Pfam	PF03106	1.0E-25	168	225	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEDKEGVDPA SEFTSDSSWA LAGGPDSVSD SVNYFFDRES NILSEFNWNL QPDHAEQIDR 60 FDELERADTR PYLAGSFSGS HSCVAAAAAA CGSGSGSGTA SSPAGGSADV STLIPSVSSS 120 SGEDPSEKHT GSGGKPPEIP SKARKKGQKR IRQPRFAFMT KSEVEHLEDG YRWRKYGQKA 180 VKNSPFPRSY YRCTNSKCTV KKRVERSSED PTIVITTYEG QHCHHSVGFP RGGLISHEAA 240 FAGRFTPSVS QFYYPHGEIP ASIIRSQQVP IEIVESRTLP QTTNEGLLGD IVPPGIRNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-25	157	224	7	74	Probable WRKY transcription factor 4
2lex_A	4e-25	157	224	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669810	0.0	KF669810.1 Gossypium hirsutum WRKY transcription factor 33 (WRKY33) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478743.1	0.0	PREDICTED: probable WRKY transcription factor 57 isoform X1
TrEMBL	A0A0D2NCR3	0.0	A0A0D2NCR3_GOSRA; Uncharacterized protein
STRING	Gorai.005G144500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4995	27	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	3e-69	WRKY DNA-binding protein 57

Link Out ? help Back to Top
Phytozome	Gorai.005G144500.1
Entrez Gene	105794228

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]