PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G129200.5
Common NameB456_005G129200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 498aa    MW: 57706.4 Da    PI: 6.5786
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G129200.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.82e-2471162190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                         ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke      +w+++++++ HnHe
  Gorai.005G129200.5  71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvngVTQWYISQFSNVHNHE 160
                         69********************8888.******************************************998766789************* PP

                FAR1  89 la 90 
                         l 
  Gorai.005G129200.5 161 LL 162
                         96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-2271162IPR004330FAR1 DNA binding domain
PfamPF105512.6E-23294387IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MTMKPSSNIW IRRQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETTSTSSS SEAVFMPYVG  60
QIFKTDEDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVNGVTQWYI SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKSV QENDALLTEK  240
RENDTLELLE ACKAMAERDA DFVYDYTTDE NSKIENISWS YADSVRAYTV FGDVVTFDTT  300
YRSITYGLLL GVWFGIDNHG KPVFLGCALL QDESLNSFAW ALQTFLRFMR GRCPQTVLTD  360
IDSSLRDAIA RELPDTKHVI CSWHVHSKLS SWFTPSLGSQ YEEFKAEFDM LCHLEGIEEF  420
EHQWNHLVAR FGLASDKHIA LLFSYRTSWP LSYIRSYFLA RSMTAEFYQS LDEFFKRILS  480
GQTCLQLFFE QVCWLGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478472.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A0D2RKI50.0A0A0D2RKI5_GOSRA; Uncharacterized protein
STRINGGorai.005G129200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]