PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G129200.4

Common Name

B456_005G129200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 727aa MW: 84538.1 Da PI: 7.2916

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G129200.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77	3.6e-24	105	196	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w+++++++ HnHe Gorai.005G129200.4 105 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvngVTQWYISQFSNVHNHE 194 69******************8888.**************************************998766789*********** PP FAR1 89 la 90 l Gorai.005G129200.4 195 LL 196 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-22	105	196	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.6E-23	328	421	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.014	599	635	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-8	606	634	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-4	610	637	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MFNCTFHIVH LLTRVQRRAL RLRSKKHFTC FCTKMTMKPS SNIWIRRQQC PCGDWKCYVK 60 YEGDDQTSVS SQLIKNETTS TSSSSEAVFM PYVGQIFKTD EDAFEYYSNF ARKNGFSIRK 120 ARSTESQNLG IYRRDFVCYR SGFNQPRKKA NVEHPRDRKS VRCGCDAKLY LTKEIVNGVT 180 QWYISQFSNV HNHELLEDDQ VRLLPAYRKI QEADQERILL LSKAGFPVNR IVKVLELEKG 240 VQPGQLPFIE KDVRNFVRTC KKSVQENDAL LTEKRENDTL ELLEACKAMA ERDADFVYDY 300 TTDENSKIEN ISWSYADSVR AYTVFGDVVT FDTTYRSITY GLLLGVWFGI DNHGKPVFLG 360 CALLQDESLN SFAWALQTFL RFMRGRCPQT VLTDIDSSLR DAIARELPDT KHVICSWHVH 420 SKLSSWFTPS LGSQYEEFKA EFDMLCHLEG IEEFEHQWNH LVARFGLASD KHIALLFSYR 480 TSWPLSYIRS YFLARSMTAE FYQSLDEFFK RILSGQTCLQ LFFEQVGFAA DLRNRSKEAL 540 QYMHTKTCLP IEENARSILT PYAFNALQHE IVLSMQYATT ELANGSYLVR HYKKMEGEYL 600 VIWISQDEQI HCSCKEFEHS GILCRHCLRV LTVKNYFEIP EKYILFRWRL ESSLVALEDR 660 NGQCNSDEYA QVFHSLAATL LTESLFTKER FNHVHRELSR LLEHVQNMPV SNEFASNMAA 720 NNISES*

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MFNCTFHIVH LLTRVQRRAL RLRSKKHFTC FCTKMTMKPS SNIWIRRQQC PCGDWKCYVK  60
YEGDDQTSVS SQLIKNETTS TSSSSEAVFM PYVGQIFKTD EDAFEYYSNF ARKNGFSIRK  120
ARSTESQNLG IYRRDFVCYR SGFNQPRKKA NVEHPRDRKS VRCGCDAKLY LTKEIVNGVT  180
QWYISQFSNV HNHELLEDDQ VRLLPAYRKI QEADQERILL LSKAGFPVNR IVKVLELEKG  240
VQPGQLPFIE KDVRNFVRTC KKSVQENDAL LTEKRENDTL ELLEACKAMA ERDADFVYDY  300
TTDENSKIEN ISWSYADSVR AYTVFGDVVT FDTTYRSITY GLLLGVWFGI DNHGKPVFLG  360
CALLQDESLN SFAWALQTFL RFMRGRCPQT VLTDIDSSLR DAIARELPDT KHVICSWHVH  420
SKLSSWFTPS LGSQYEEFKA EFDMLCHLEG IEEFEHQWNH LVARFGLASD KHIALLFSYR  480
TSWPLSYIRS YFLARSMTAE FYQSLDEFFK RILSGQTCLQ LFFEQVGFAA DLRNRSKEAL  540
QYMHTKTCLP IEENARSILT PYAFNALQHE IVLSMQYATT ELANGSYLVR HYKKMEGEYL  600
VIWISQDEQI HCSCKEFEHS GILCRHCLRV LTVKNYFEIP EKYILFRWRL ESSLVALEDR  660
NGQCNSDEYA QVFHSLAATL LTESLFTKER FNHVHRELSR LLEHVQNMPV SNEFASNMAA  720
NNISES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478472.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0D2PS78	0.0	A0A0D2PS78_GOSRA; Uncharacterized protein
STRING	Gorai.005G129200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Gorai.005G129200.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]