PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G129200.2

Common Name

B456_005G129200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 693aa MW: 80363 Da PI: 6.5455

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G129200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.1	3.3e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w+++++++ HnHe Gorai.005G129200.2 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvngVTQWYISQFSNVHNHE 160 69******************8888.**************************************998766789*********** PP FAR1 89 la 90 l Gorai.005G129200.2 161 LL 162 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-22	71	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.3E-23	294	387	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.014	565	601	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.2E-8	572	600	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-4	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MTMKPSSNIW IRRQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETTSTSSS SEAVFMPYVG 60 QIFKTDEDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVNGVTQWYI SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKSV QENDALLTEK 240 RENDTLELLE ACKAMAERDA DFVYDYTTDE NSKIENISWS YADSVRAYTV FGDVVTFDTT 300 YRSITYGLLL GVWFGIDNHG KPVFLGCALL QDESLNSFAW ALQTFLRFMR GRCPQTVLTD 360 IDSSLRDAIA RELPDTKHVI CSWHVHSKLS SWFTPSLGSQ YEEFKAEFDM LCHLEGIEEF 420 EHQWNHLVAR FGLASDKHIA LLFSYRTSWP LSYIRSYFLA RSMTAEFYQS LDEFFKRILS 480 GQTCLQLFFE QVGFAADLRN RSKEALQYMH TKTCLPIEEN ARSILTPYAF NALQHEIVLS 540 MQYATTELAN GSYLVRHYKK MEGEYLVIWI SQDEQIHCSC KEFEHSGILC RHCLRVLTVK 600 NYFEIPEKYI LFRWRLESSL VALEDRNGQC NSDEYAQVFH SLAATLLTES LFTKERFNHV 660 HRELSRLLEH VQNMPVSNEF ASNMAANNIS ES*

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MTMKPSSNIW IRRQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETTSTSSS SEAVFMPYVG  60
QIFKTDEDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVNGVTQWYI SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKSV QENDALLTEK  240
RENDTLELLE ACKAMAERDA DFVYDYTTDE NSKIENISWS YADSVRAYTV FGDVVTFDTT  300
YRSITYGLLL GVWFGIDNHG KPVFLGCALL QDESLNSFAW ALQTFLRFMR GRCPQTVLTD  360
IDSSLRDAIA RELPDTKHVI CSWHVHSKLS SWFTPSLGSQ YEEFKAEFDM LCHLEGIEEF  420
EHQWNHLVAR FGLASDKHIA LLFSYRTSWP LSYIRSYFLA RSMTAEFYQS LDEFFKRILS  480
GQTCLQLFFE QVGFAADLRN RSKEALQYMH TKTCLPIEEN ARSILTPYAF NALQHEIVLS  540
MQYATTELAN GSYLVRHYKK MEGEYLVIWI SQDEQIHCSC KEFEHSGILC RHCLRVLTVK  600
NYFEIPEKYI LFRWRLESSL VALEDRNGQC NSDEYAQVFH SLAATLLTES LFTKERFNHV  660
HRELSRLLEH VQNMPVSNEF ASNMAANNIS ES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478472.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_012478473.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2
Refseq	XP_012478474.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0D2PS78	0.0	A0A0D2PS78_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2RE38	0.0	A0A0D2RE38_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2SFW4	0.0	A0A0D2SFW4_GOSRA; Uncharacterized protein
STRING	Gorai.005G129200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Gorai.005G129200.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]