PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G129200.1

Common Name

B456_005G129200, LOC105794042

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 728aa MW: 84510 Da PI: 7.2675

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G129200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77	3.6e-24	106	197	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w+++++++ HnHe Gorai.005G129200.1 106 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvngVTQWYISQFSNVHNHE 195 69******************8888.**************************************998766789*********** PP FAR1 89 la 90 l Gorai.005G129200.1 196 LL 197 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-22	106	197	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.6E-23	329	422	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.014	600	636	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-8	607	635	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-4	611	638	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MTTIFSSMKG LNFNIVQRRA LRLRSKKHFT CFCTKMTMKP SSNIWIRRQQ CPCGDWKCYV 60 KYEGDDQTSV SSQLIKNETT STSSSSEAVF MPYVGQIFKT DEDAFEYYSN FARKNGFSIR 120 KARSTESQNL GIYRRDFVCY RSGFNQPRKK ANVEHPRDRK SVRCGCDAKL YLTKEIVNGV 180 TQWYISQFSN VHNHELLEDD QVRLLPAYRK IQEADQERIL LLSKAGFPVN RIVKVLELEK 240 GVQPGQLPFI EKDVRNFVRT CKKSVQENDA LLTEKRENDT LELLEACKAM AERDADFVYD 300 YTTDENSKIE NISWSYADSV RAYTVFGDVV TFDTTYRSIT YGLLLGVWFG IDNHGKPVFL 360 GCALLQDESL NSFAWALQTF LRFMRGRCPQ TVLTDIDSSL RDAIARELPD TKHVICSWHV 420 HSKLSSWFTP SLGSQYEEFK AEFDMLCHLE GIEEFEHQWN HLVARFGLAS DKHIALLFSY 480 RTSWPLSYIR SYFLARSMTA EFYQSLDEFF KRILSGQTCL QLFFEQVGFA ADLRNRSKEA 540 LQYMHTKTCL PIEENARSIL TPYAFNALQH EIVLSMQYAT TELANGSYLV RHYKKMEGEY 600 LVIWISQDEQ IHCSCKEFEH SGILCRHCLR VLTVKNYFEI PEKYILFRWR LESSLVALED 660 RNGQCNSDEY AQVFHSLAAT LLTESLFTKE RFNHVHRELS RLLEHVQNMP VSNEFASNMA 720 ANNISES*

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MTTIFSSMKG LNFNIVQRRA LRLRSKKHFT CFCTKMTMKP SSNIWIRRQQ CPCGDWKCYV  60
KYEGDDQTSV SSQLIKNETT STSSSSEAVF MPYVGQIFKT DEDAFEYYSN FARKNGFSIR  120
KARSTESQNL GIYRRDFVCY RSGFNQPRKK ANVEHPRDRK SVRCGCDAKL YLTKEIVNGV  180
TQWYISQFSN VHNHELLEDD QVRLLPAYRK IQEADQERIL LLSKAGFPVN RIVKVLELEK  240
GVQPGQLPFI EKDVRNFVRT CKKSVQENDA LLTEKRENDT LELLEACKAM AERDADFVYD  300
YTTDENSKIE NISWSYADSV RAYTVFGDVV TFDTTYRSIT YGLLLGVWFG IDNHGKPVFL  360
GCALLQDESL NSFAWALQTF LRFMRGRCPQ TVLTDIDSSL RDAIARELPD TKHVICSWHV  420
HSKLSSWFTP SLGSQYEEFK AEFDMLCHLE GIEEFEHQWN HLVARFGLAS DKHIALLFSY  480
RTSWPLSYIR SYFLARSMTA EFYQSLDEFF KRILSGQTCL QLFFEQVGFA ADLRNRSKEA  540
LQYMHTKTCL PIEENARSIL TPYAFNALQH EIVLSMQYAT TELANGSYLV RHYKKMEGEY  600
LVIWISQDEQ IHCSCKEFEH SGILCRHCLR VLTVKNYFEI PEKYILFRWR LESSLVALED  660
RNGQCNSDEY AQVFHSLAAT LLTESLFTKE RFNHVHRELS RLLEHVQNMP VSNEFASNMA  720
ANNISES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478472.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0D2RE38	0.0	A0A0D2RE38_GOSRA; Uncharacterized protein
STRING	Gorai.005G129200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Gorai.005G129200.1
Entrez Gene	105794042

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]