PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G126700.1 | ||||||||
Common Name | B456_005G126700, LOC105794002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 247aa MW: 28172.8 Da PI: 7.6649 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.5 | 5.4e-29 | 82 | 169 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+lap Gorai.005G126700.1 82 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLAP 169 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-26 | 82 | 169 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEFGVHGDVN GGMVLNSVQA EASSMENENE TGENPVEETF QKELNEKVEQ ISPGRDDIPE 60 GIPADEPYVG QEFESEAAAH AFYNAYATRV GFIIRVSKLS RSRRDGSAIG RALVCNKEGF 120 RMPDKREKIV RQRAETRVGC RAMILVRKVS SGKWVVTKFV KEHTHPLAPG KGRRDCIYDQ 180 YPNEHNKIRE LTQQLAIEKK RAATYKRHLE LIFEQIEEHN ESLSKKIQHI VDRVREIESK 240 EQQNRV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478406.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X2 | ||||
Refseq | XP_016693429.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X1 | ||||
TrEMBL | A0A0D2SFJ5 | 0.0 | A0A0D2SFJ5_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JYQ1 | 0.0 | A0A1U8JYQ1_GOSHI; protein FAR1-RELATED SEQUENCE 12-like isoform X1 | ||||
STRING | Gorai.005G126700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7302 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-101 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G126700.1 |
Entrez Gene | 105794002 |
Publications ? help Back to Top | |||
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