PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G098200.1
Common NameB456_005G098200, LOC105797276
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 257aa    MW: 28915.7 Da    PI: 7.4278
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G098200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-19112166256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++t+eq  +Le+ F++++++s ++++ LA++l+L  rqV vWFqNrRa+ k
  Gorai.005G098200.1 112 RKKLRLTREQSSILEDKFKQHSTLSPKQKQALAEELNLRPRQVEVWFQNRRARTK 166
                         78889************************************************98 PP
2HD-ZIP_I/II120.11.1e-38112200190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl++eq+++LE++F+++++L+p++K++la+eL+l+prqv+vWFqnrRARtk+kq+E+++e Lk++y++l+een+rL+keveeL+ +
  Gorai.005G098200.1 112 RKKLRLTREQSSILEDKFKQHSTLSPKQKQALAEELNLRPRQVEVWFQNRRARTKLKQTEVNCELLKKCYETLTEENKRLQKEVEELK-S 200
                         69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-18107169IPR009057Homeodomain-like
PROSITE profilePS5007117.637108168IPR001356Homeobox domain
SMARTSM003892.2E-17110172IPR001356Homeobox domain
CDDcd000868.16E-17111169No hitNo description
Gene3DG3DSA:1.10.10.601.8E-18112166IPR009057Homeodomain-like
PfamPF000464.8E-17112166IPR001356Homeobox domain
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PfamPF021831.5E-8168201IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.8E-20168211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGFDDICNTA LGLGLGCLVK QENISQLDHH QQKKKQLFLK HDHFSPSLLS LAPSYDTCAI  60
FDAHQQQASS LSAASSFSNS SVKRERDLGG EEVELERICS RVSDEDDEGS PRKKLRLTRE  120
QSSILEDKFK QHSTLSPKQK QALAEELNLR PRQVEVWFQN RRARTKLKQT EVNCELLKKC  180
YETLTEENKR LQKEVEELKS LKVTAPCYMQ VGAATLTMCP SCERVDNVGE NPSTTLFTLG  240
QKSHFITPFT HPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5269240.0HQ526924.1 Gossypium herbaceum clone NBRI_B2_832 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482687.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466043e-77HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0D2NA650.0A0A0D2NA65_GOSRA; Uncharacterized protein
STRINGGorai.005G098200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-75HD-ZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]