PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G092400.2
Common NameB456_005G092400, LOC105797202
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 339aa    MW: 38349 Da    PI: 6.4253
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G092400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.9e-116399440
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40
                        +k +rr+++NReAAr+sR+RKka++++Le    +L +
  Gorai.005G092400.2 63 DKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQ 99
                        799**************************84433333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.0E-855109No hitNo description
SMARTSM003383.2E-660120IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.09462106IPR004827Basic-leucine zipper domain
PfamPF001704.4E-863102IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-764106No hitNo description
CDDcd147084.65E-2264116No hitNo description
PROSITE patternPS0003606782IPR004827Basic-leucine zipper domain
PfamPF141441.8E-28151226IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MTIYEQLNQI SRWGDSFNRG DSPNTGSSTI VEGDVRLENK AGYISCDQVE PSRSDQETNK  60
PIDKTQRRLA QNREAARKSR LRKKAYVQQL ESSRLKLAQL EQELERTRQQ GIYISSPSDT  120
GYFGLSGTVN SGITAFEMEY GHWVEVQNKQ TCELRSALQA HITDIELQIL VEHGLNHYCN  180
LFRMKADAAK ADVFYLSSGI WRTSAERFFH WIGGFRPSEL LNVVMSHIEP LTDQQQLEVC  240
NLRQSSQQAE DALSQGIDKL QQNFSCSVAS DLSWGHYRAQ MAVATDIIEA LEGFVNQADH  300
LREQTLLQMV RILTTHQAAR GLLALGDYFN RLRALSSL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482600.10.0PREDICTED: transcription factor TGA3-like isoform X1
RefseqXP_012482601.10.0PREDICTED: transcription factor TGA3-like isoform X1
RefseqXP_012482602.10.0PREDICTED: transcription factor TGA3-like isoform X1
RefseqXP_012482603.10.0PREDICTED: transcription factor TGA3-like isoform X1
RefseqXP_012482604.10.0PREDICTED: transcription factor TGA3-like isoform X1
SwissprotQ93ZE21e-145TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A0D2SDI80.0A0A0D2SDI8_GOSRA; Uncharacterized protein
STRINGGorai.005G092400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-139bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]